* installing to library ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages’ * installing *source* package ‘RNifti’ ... ** package ‘RNifti’ successfully unpacked and MD5 sums checked ** using staged installation checking for gcc... gcc-13 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc-13 accepts -g... yes checking for gcc-13 option to enable C11 features... none needed checking for library containing inflate... -lz configure: creating ./config.status config.status: creating src/Makevars ** libs using C compiler: ‘gcc-13 (Debian 13.2.0-23) 13.2.0’ using C++ compiler: ‘g++-13 (Debian 13.2.0-23) 13.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpvFVsK1/R.INSTALLa766c69ff796a/RNifti/src' g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c main.cpp -o main.o gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c zzz.c -o zzz.o gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c znzlib/znzlib.c -o znzlib/znzlib.o gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c niftilib/nifti1_io.c -o niftilib/nifti1_io.o niftilib/nifti1_io.c:449:14: warning: ‘print_hex_vals’ declared ‘static’ but never defined [-Wunused-function] 449 | static int print_hex_vals (const char * data, size_t nbytes, FILE * fp); | ^~~~~~~~~~~~~~ niftilib/nifti1_io.c:6135:14: warning: ‘escapize_string’ defined but not used [-Wunused-function] 6135 | static char *escapize_string( const char * str ) | ^~~~~~~~~~~~~~~ niftilib/nifti1_io.c:3337:12: warning: ‘compare_strlist’ defined but not used [-Wunused-function] 3337 | static int compare_strlist(const char * str, char ** strlist, int len) | ^~~~~~~~~~~~~~~ niftilib/nifti1_io.c:3323:12: warning: ‘make_lowercase’ defined but not used [-Wunused-function] 3323 | static int make_lowercase(char * str) | ^~~~~~~~~~~~~~ niftilib/nifti1_io.c:3310:12: warning: ‘make_uppercase’ defined but not used [-Wunused-function] 3310 | static int make_uppercase(char * str) | ^~~~~~~~~~~~~~ niftilib/nifti1_io.c:3292:12: warning: ‘is_mixedcase’ defined but not used [-Wunused-function] 3292 | static int is_mixedcase(const char * str) | ^~~~~~~~~~~~ niftilib/nifti1_io.c:3276:12: warning: ‘is_uppercase’ defined but not used [-Wunused-function] 3276 | static int is_uppercase(const char * str) | ^~~~~~~~~~~~ niftilib/nifti1_io.c:363:29: warning: ‘nifti_type_list’ defined but not used [-Wunused-const-variable=] 363 | static const nifti_type_ele nifti_type_list[] = { | ^~~~~~~~~~~~~~~ niftilib/nifti1_io.c:353:19: warning: ‘gni_version’ defined but not used [-Wunused-const-variable=] 353 | static const char gni_version[] = NIFTI1_IO_SOURCE_VERSION " (16 Jun, 2022)"; | ^~~~~~~~~~~ gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c niftilib/nifti2_io.c -o niftilib/nifti2_io.o niftilib/nifti2_io.c:8250:14: warning: ‘escapize_string’ defined but not used [-Wunused-function] 8250 | static char *escapize_string( const char * str ) | ^~~~~~~~~~~~~~~ niftilib/nifti2_io.c:4468:12: warning: ‘print_hex_vals’ defined but not used [-Wunused-function] 4468 | static int print_hex_vals( const char * data, size_t nbytes, FILE * fp ) | ^~~~~~~~~~~~~~ g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -Wl,-O1 -o RNifti.so main.o zzz.o znzlib/znzlib.o niftilib/nifti1_io.o niftilib/nifti2_io.o -lz -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpvFVsK1/R.INSTALLa766c69ff796a/RNifti/src' make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpvFVsK1/R.INSTALLa766c69ff796a/RNifti/src' make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpvFVsK1/R.INSTALLa766c69ff796a/RNifti/src' installing to /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/00LOCK-RNifti/00new/RNifti/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * creating tarball packaged installation of ‘RNifti’ as ‘RNifti_1.6.1_R_x86_64-pc-linux-gnu.tar.gz’ * DONE (RNifti)