* installing to library ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages’
* installing *source* package ‘MMVBVS’ ...
** package ‘MMVBVS’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-23) 13.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpDgmHcR/R.INSTALL20d7b461ada74/MMVBVS/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c mmvbvs.cpp -o mmvbvs.o
mmvbvs.cpp: In function ‘arma::mat em_with_zero_mean_c(arma::mat, int)’:
mmvbvs.cpp:107:40: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
  107 |       if (0 < ind.size() && ind.size() < p){
      |                             ~~~~~~~~~~~^~~
mmvbvs.cpp: In function ‘Rcpp::List update_h_c(double, int, arma::vec, arma::vec, arma::mat, arma::vec, int)’:
mmvbvs.cpp:390:18: warning: unnecessary parentheses in declaration of ‘rr’ [-Wparentheses]
  390 |     NumericVector(rr) = runif(1, -0.05, 0.05);
      |                  ^~~~
mmvbvs.cpp:390:18: note: remove parentheses
  390 |     NumericVector(rr) = runif(1, -0.05, 0.05);
      |                  ^~~~
      |                  -  -
mmvbvs.cpp:399:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘unsigned int’} [-Wsign-compare]
  399 |     for (int j=0; j < ind.size(); ++j){
      |                   ~~^~~~~~~~~~~~
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -Wl,-O1 -o MMVBVS.so RcppExports.o mmvbvs.o -llapack -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpDgmHcR/R.INSTALL20d7b461ada74/MMVBVS/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpDgmHcR/R.INSTALL20d7b461ada74/MMVBVS/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpDgmHcR/R.INSTALL20d7b461ada74/MMVBVS/src'
installing to /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/00LOCK-MMVBVS/00new/MMVBVS/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* creating tarball
packaged installation of ‘MMVBVS’ as ‘MMVBVS_0.8.0_R_x86_64-pc-linux-gnu.tar.gz’
* DONE (MMVBVS)