• using R Under development (unstable) (2018-04-24 r74637)
• using platform: x86_64-pc-linux-gnu (64-bit)
• using session charset: UTF-8
• checking for file ‘MASS/DESCRIPTION’ ... OK
• this is package ‘MASS’ version ‘7.3-49’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘MASS’ can be installed ... OK
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [19s/28s] OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking examples ... [9s/13s] OK
• checking differences from ‘MASS-Ex.Rout’ to ‘MASS-Ex.Rout.save’ ... OK
  
  582c582
  < Likelihood ratio test=9.85 on 1 df, p=0.002
  ---
  > Likelihood ratio test=9.85 on 1 df, p=0.0017
  596c596
  < Likelihood ratio test=15.45 on 4 df, p=0.004
  ---
  > Likelihood ratio test=15.4 on 4 df, p=0.00385
  607c607
  < Likelihood ratio test=15.15 on 1 df, p=1e-04
  ---
  > Likelihood ratio test=15.2 on 1 df, p=9.93e-05
  1988c1988
  < Chisq= 30.27 on 21 degrees of freedom, p= 0.0866
  ---
  > Chisq= 30.27 on 21 degrees of freedom, p= 0.087
  1995,1996c1995,1996
  < (Intercept) 3.686 0.333 11.06 < 2e-16
  < treatcontrol -1.527 0.398 -3.83 0.00013
  ---
  > (Intercept) 3.69 0.333 11.06 2.00e-28
  > treatcontrol -1.53 0.398 -3.83 1.27e-04
  2011,2013c2011,2013
  < (Intercept) 3.516 0.252 13.96 < 2e-16
  < treatcontrol -1.267 0.311 -4.08 4.5e-05
  < Log(scale) -0.312 0.147 -2.12 0.034
  ---
  > (Intercept) 3.516 0.252 13.96 2.61e-44
  > treatcontrol -1.267 0.311 -4.08 4.51e-05
  > Log(scale) -0.312 0.147 -2.12 3.43e-02
  2040,2042c2040,2042
  < Likelihood ratio test= 16.35 on 1 df, p=5e-05
  < Wald test = 14.53 on 1 df, p=1e-04
  < Score (logrank) test = 17.25 on 1 df, p=3e-05
  ---
  > Likelihood ratio test= 16.35 on 1 df, p=5.261e-05
  > Wald test = 14.53 on 1 df, p=0.0001378
  > Score (logrank) test = 17.25 on 1 df, p=3.283e-05
  3025,3027c3025,3027
  < Likelihood ratio test= 15.64 on 2 df, p=4e-04
  < Wald test = 15.06 on 2 df, p=5e-04
  < Score (logrank) test = 16.49 on 2 df, p=3e-04
  ---
  > Likelihood ratio test= 15.64 on 2 df, p=0.0004014
  > Wald test = 15.06 on 2 df, p=0.0005365
  > Score (logrank) test = 16.49 on 2 df, p=0.0002629
  3286,3288c3286,3288
  < (Intercept) 16.31852 0.62296 26.2 < 2e-16
  < temp -0.04531 0.00319 -14.2 < 2e-16
  < Log(scale) -1.09564 0.21480 -5.1 3.4e-07
  ---
  > (Intercept) 16.3185 0.62296 26.2 3.03e-151
  > temp -0.0453 0.00319 -14.2 6.74e-46
  > Log(scale) -1.0956 0.21480 -5.1 3.38e-07
  3320,3322c3320,3322
  < Likelihood ratio test= 25.56 on 1 df, p=4e-07
  < Wald test = 11.27 on 1 df, p=8e-04
  < Score (logrank) test = 22.73 on 1 df, p=2e-06
  ---
  > Likelihood ratio test= 25.56 on 1 df, p=4.299e-07
  > Wald test = 11.27 on 1 df, p=0.0007863
  > Score (logrank) test = 22.73 on 1 df, p=1.862e-06
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [4s/8s] OK
    Running ‘confint.R’ [0s/1s]
    Running ‘fitdistr.R’ [0s/1s]
    Comparing ‘fitdistr.Rout’ to ‘fitdistr.Rout.save’ ... OK
    Running ‘glm.nb.R’ [0s/1s]
    Running ‘hubers.R’ [0s/0s]
    Running ‘lme.R’ [1s/1s]
    Running ‘polr.R’ [0s/1s]
    Running ‘profile.R’ [0s/0s]
    Running ‘regression.R’ [0s/1s]
    Comparing ‘regression.Rout’ to ‘regression.Rout.save’ ... OK
    Running ‘rlm.R’ [0s/1s]
    Running ‘scripts.R’ [0s/1s]
• checking PDF version of manual ... OK
• DONE

Status: OK