* installing to library ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages’
* installing *source* package ‘JFM’ ...
** package ‘JFM’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-23) 13.2.0’
using C++11
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpdHhV1p/R.INSTALL248ae3221a9e9b/JFM/src'
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native   -c wildfire_mesh.cpp -o wildfire_mesh.o
wildfire_mesh.cpp: In function ‘arma::mat Rcpp_wildfire_search(double, arma::mat, arma::mat)’:
wildfire_mesh.cpp:133:12: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  133 |   while (r < nrow_norm) {
      |          ~~^~~~~~~~~~~
wildfire_mesh.cpp:280:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  280 |   for (unsigned int i=0; i< nrow_norm;i++){
      |                          ~^~~~~~~~~~~
wildfire_mesh.cpp: In function ‘std::vector<double> compute_triangle_area_rcpp(arma::mat)’:
wildfire_mesh.cpp:315:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  315 |   for (unsigned int i=0; i < nrow_coord; i++) {
      |                          ~~^~~~~~~~~~~~
wildfire_mesh.cpp: In function ‘std::vector<double> compute_plane_area_rcpp(arma::mat, std::vector<int, std::allocator<int> >)’:
wildfire_mesh.cpp:371:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  371 |     for (unsigned int i=0; i < nrow_coord; i++) {
      |                            ~~^~~~~~~~~~~~
wildfire_mesh.cpp: In function ‘Rcpp::NumericVector least_square_plane_rcpp(Rcpp::NumericMatrix)’:
wildfire_mesh.cpp:495:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  495 |   for (unsigned int i = 0; i < nrow_Points; i++) {
      |                            ~~^~~~~~~~~~~~~
wildfire_mesh.cpp: In function ‘std::vector<int, std::allocator<int> > find_triangles_rcpp(Rcpp::NumericMatrix, int)’:
wildfire_mesh.cpp:555:3: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  555 |   for (unsigned int i=0; i<l1.size()-1; i++)
      |   ^~~
wildfire_mesh.cpp:566:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  566 |     temp[j++] = l1[l1.size()-1];
      |     ^~~~
wildfire_mesh.cpp:571:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  571 |     for (int i=0; i<j; i++)
      |     ^~~
wildfire_mesh.cpp:574:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  574 |       return l1;
      |       ^~~~~~
wildfire_mesh.cpp: In function ‘Rcpp::NumericMatrix find_neighbours_rcpp(Rcpp::NumericMatrix)’:
wildfire_mesh.cpp:596:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  596 |   for (unsigned int r = 0; r< num_rows; r++) {
      |                            ~^~~~~~~~~~
wildfire_mesh.cpp:619:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  619 |     for (unsigned int i=0; i<l1.size()-1; i++)
      |     ^~~
wildfire_mesh.cpp:630:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  630 |       temp[j++] = l1[l1.size()-1];
      |       ^~~~
wildfire_mesh.cpp:636:20: warning: comparison of integer expressions of different signedness: ‘__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare]
  636 |         if (temp[i]!=r) neighbours_v.push_back(temp[i]);
wildfire_mesh.cpp: In function ‘arma::mat compute_plane_normal(arma::mat, arma::mat, std::vector<int, std::allocator<int> >)’:
wildfire_mesh.cpp:740:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  740 |     for (unsigned int i=0; i < nrow_it; i++) {
      |                            ~~^~~~~~~~~
wildfire_mesh.cpp: In function ‘Rcpp::NumericMatrix test_rcpp(arma::mat, arma::mat, std::vector<int, std::allocator<int> >)’:
wildfire_mesh.cpp:865:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  865 |     for (unsigned int i=0; i < nrow_it; i++) {
      |                            ~~^~~~~~~~~
g++-13 -std=gnu++11 -shared -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -Wl,-O1 -o JFM.so RcppExports.o wildfire_mesh.o -fopenmp -llapack -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpdHhV1p/R.INSTALL248ae3221a9e9b/JFM/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpdHhV1p/R.INSTALL248ae3221a9e9b/JFM/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpdHhV1p/R.INSTALL248ae3221a9e9b/JFM/src'
installing to /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/00LOCK-JFM/00new/JFM/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* creating tarball
packaged installation of ‘JFM’ as ‘JFM_1.0_R_x86_64-pc-linux-gnu.tar.gz’
* DONE (JFM)