* using log directory ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/DRomics.Rcheck’
* using R Under development (unstable) (2024-04-29 r86495)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc-13 (Debian 13.2.0-23) 13.2.0
    GNU Fortran (Debian 13.2.0-23) 13.2.0
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘DRomics/DESCRIPTION’ ... OK
* this is package ‘DRomics’ version ‘2.5-2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘DRomics’ can be installed ... OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-debian-gcc/DRomics-00install.html' for details.
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [11s/19s] OK
* checking whether the package can be loaded with stated dependencies ... [10s/18s] OK
* checking whether the package can be unloaded cleanly ... [10s/17s] OK
* checking whether the namespace can be loaded with stated dependencies ... [11s/15s] OK
* checking whether the namespace can be unloaded cleanly ... [11s/18s] OK
* checking loading without being on the library search path ... [11s/17s] OK
* checking whether startup messages can be suppressed ... [11s/19s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [57s/85s] OK
* checking Rd files ... [1s/1s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/1s] OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [47s/75s] OK
Examples with CPU (user + system) or elapsed time > 5s
            user system elapsed
bmdfilter  5.271  0.098   8.838
drcfit     4.925  0.067   8.576
RNAseqdata 4.694  0.216   6.812
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [173s/284s] OK
  Running ‘examplewithNAvalues.R’ [10s/17s]
  Running ‘examplewithRNAseq.R’ [13s/22s]
  Running ‘examplewithanchoringdata.R’ [11s/15s]
  Running ‘examplewithinsitudata.R’ [10s/14s]
  Running ‘examplewithmetabolomic.R’ [12s/20s]
  Running ‘examplewithmicroarray.R’ [12s/19s]
  Running ‘examplewithnoreplicate.R’ [11s/17s]
  Running ‘testAIC.R’ [10s/18s]
  Running ‘test_selectgroups.R’ [10s/18s]
  Running ‘testbmdcalc.R’ [10s/15s]
  Running ‘testbmdplotwithgradient.R’ [10s/19s]
  Running ‘testplotfit.R’ [10s/17s]
  Running ‘testresidualtests.R’ [10s/21s]
  Running ‘testscaling.R’ [10s/19s]
  Running ‘testsensitivityplot.R’ [11s/18s]
  Running ‘testthat.R’ [11s/15s]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [158s/275s] OK
* checking PDF version of manual ... [8s/16s] OK
* checking HTML version of manual ... [2s/4s] OK
* checking for non-standard things in the check directory ... OK
* DONE
Status: OK