* installing to library ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages’ * installing *source* package ‘BoolNet’ ... ** package ‘BoolNet’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-13 (Debian 13.2.0-23) 13.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpRxJxfo/R.INSTALL1d79175c171121/BoolNet/src' gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c attractor_info.c -o attractor_info.o gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c attractor_search_interface.c -o attractor_search_interface.o gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c common.c -o common.o gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c picosat.c -o picosat.o picosat.c: In function ‘relemhead’: picosat.c:3263:15: warning: variable ‘fmt’ set but not used [-Wunused-but-set-variable] 3263 | const char *fmt; | ^~~ picosat.c: In function ‘fanalyze’: picosat.c:3776:10: warning: unused variable ‘start’ [-Wunused-variable] 3776 | double start = picosat_time_stamp (); | ^~~~~ picosat.c: In function ‘picosat_mus_assumptions’: picosat.c:7377:24: warning: unused variable ‘norig’ [-Wunused-variable] 7377 | int i, j, ilit, len, norig = ps->alshead - ps->als, nwork, * work, res; | ^~~~~ picosat.c: In function ‘picosat_stats’: picosat.c:7991:12: warning: variable ‘redlits’ set but not used [-Wunused-but-set-variable] 7991 | unsigned redlits; | ^~~~~~~ picosat.c: At top level: picosat.c:6967:21: warning: ‘enumstr’ defined but not used [-Wunused-function] 6967 | static const char * enumstr (int i) { | ^~~~~~~ gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c probabilistic_boolean_network.c -o probabilistic_boolean_network.o gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c reconstruct_network.c -o reconstruct_network.o reconstruct_network.c: In function ‘reconstructNetwork_R’: reconstruct_network.c:1069:11: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] 1069 | else | ^~~~ reconstruct_network.c:1074:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ 1074 | SETCADR(entrySXP,funcSXP); | ^~~~~~~ gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c sat_search.c -o sat_search.o gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c statespace_search.c -o statespace_search.o gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c symbolic_network.c -o symbolic_network.o gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c symbolic_simulator.c -o symbolic_simulator.o gcc-13 -shared -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -Wl,-O1 -o BoolNet.so attractor_info.o attractor_search_interface.o common.o init.o picosat.o probabilistic_boolean_network.o reconstruct_network.o sat_search.o statespace_search.o symbolic_network.o symbolic_simulator.o -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpRxJxfo/R.INSTALL1d79175c171121/BoolNet/src' make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpRxJxfo/R.INSTALL1d79175c171121/BoolNet/src' make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpRxJxfo/R.INSTALL1d79175c171121/BoolNet/src' installing to /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/00LOCK-BoolNet/00new/BoolNet/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * creating tarball packaged installation of ‘BoolNet’ as ‘BoolNet_2.1.9_R_x86_64-pc-linux-gnu.tar.gz’ * DONE (BoolNet)