* installing to library ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages’ * installing *source* package ‘Bayesrel’ ... ** package ‘Bayesrel’ successfully unpacked and MD5 sums checked ** using staged installation Using bundled CSDP checking for gcc... gcc-13 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc-13 accepts -g... yes checking for gcc-13 option to accept ISO C89... none needed checking how to run the C preprocessor... gcc-13 -E checking whether we are using the GNU C++ compiler... yes checking whether g++-13 -std=gnu++17 accepts -g... yes checking how to run the C++ preprocessor... g++-13 -std=gnu++17 -E checking whether we are using the GNU C++ compiler... (cached) yes checking whether g++-13 -std=gnu++17 accepts -g... (cached) yes configure: creating ./config.status config.status: creating src/Makevars ** libs using C++ compiler: ‘g++-13 (Debian 13.2.0-23) 13.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpogbJjK/R.INSTALL1479a32e502ef7/Bayesrel/src' g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -ICsdp/include -DNOSHORTS -DARMA_NO_DEBUG=1 -DARMA_DONT_USE_FORTRAN_HIDDEN_ARGS -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c BayesrelCpp.cpp -o BayesrelCpp.o BayesrelCpp.cpp: In function ‘arma::dvec csdpArma(int, int, int, const arma::ivec&, const arma::ivec&, const Rcpp::List&, const Rcpp::List&, const arma::dvec&, const arma::cube&, Rcpp::Function, int)’: BayesrelCpp.cpp:31:9: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 31 | int status; | ^~~~~~ g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -ICsdp/include -DNOSHORTS -DARMA_NO_DEBUG=1 -DARMA_DONT_USE_FORTRAN_HIDDEN_ARGS -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c LowBoundsCpp.cpp -o LowBoundsCpp.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -ICsdp/include -DNOSHORTS -DARMA_NO_DEBUG=1 -DARMA_DONT_USE_FORTRAN_HIDDEN_ARGS -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -ICsdp/include -DNOSHORTS -DARMA_NO_DEBUG=1 -DARMA_DONT_USE_FORTRAN_HIDDEN_ARGS -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c convertCpp.cpp -o convertCpp.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -ICsdp/include -DNOSHORTS -DARMA_NO_DEBUG=1 -DARMA_DONT_USE_FORTRAN_HIDDEN_ARGS -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c customsdpCpp.cpp -o customsdpCpp.o customsdpCpp.cpp: In function ‘int custom_sdpCpp(int, int, blockmatrix&, double*, constraintmatrix*, double, double*, double*, const arma::cube&, arma::dvec&, Rcpp::Function, bool, int)’: customsdpCpp.cpp:423:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 423 | for(i=0; iaxtol)); | ^~~ gcc-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o add_mat.o add_mat.c gcc-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o writesol.o writesol.c gcc-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o readsol.o readsol.c gcc-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o easysdp.o easysdp.c easysdp.c: In function ‘easy_sdp’: easysdp.c:55:7: warning: variable ‘blk’ set but not used [-Wunused-but-set-variable] 55 | int blk; | ^~~ gcc-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o writeprob.o writeprob.c gcc-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o solvesys.o solvesys.c gcc-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o makefill.o makefill.c gcc-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o mat_multsp.o mat_multsp.c mat_multsp.c: In function ‘mat_multspb’: mat_multsp.c:169: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 169 | #pragma omp parallel for schedule(dynamic,64) default(none) private(i,j) shared(blk,C,scale2) | mat_multsp.c:55:7: warning: unused variable ‘thread_num’ [-Wunused-variable] 55 | int thread_num; | ^~~~~~~~~~ mat_multsp.c:54:7: warning: unused variable ‘total_threads’ [-Wunused-variable] 54 | int total_threads; | ^~~~~~~~~~~~~ mat_multsp.c: In function ‘mat_multspa’: mat_multsp.c:406: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 406 | #pragma omp parallel for default(none) schedule(dynamic,64) private(i,j) shared(blk,C,scale2) | mat_multsp.c:291:7: warning: unused variable ‘thread_num’ [-Wunused-variable] 291 | int thread_num; | ^~~~~~~~~~ mat_multsp.c:290:7: warning: unused variable ‘total_threads’ [-Wunused-variable] 290 | int total_threads; | ^~~~~~~~~~~~~ mat_multsp.c: In function ‘mat_multspc’: mat_multsp.c:589: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 589 | #pragma omp parallel for schedule(dynamic,64) default(none) private(i,ii,p,q,temp) shared(ptr,A,B,C,blk,blksize,scale1) | mat_multsp.c:630: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 630 | #pragma omp parallel for default(none) schedule(dynamic,64) private(i,j) shared(blk,C,scale2) | gcc-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o norms.o norms.c gcc-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o linesearch.o linesearch.c gcc-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o matvec.o matvec.c gcc-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o chol.o chol.c chol.c: In function ‘chol_inv’: chol.c:158:10: warning: variable ‘scale’ set but not used [-Wunused-but-set-variable] 158 | double scale; | ^~~~~ gcc-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o qreig.o qreig.c gcc-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o tweakgap.o tweakgap.c gcc-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o freeprob.o freeprob.c gcc-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o packed.o packed.c packed.c: In function ‘store_packed’: packed.c:31: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 31 | #pragma omp parallel for schedule(dynamic,64) private(i,j) shared(p,q,n) | packed.c: In function ‘store_unpacked’: packed.c:65: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 65 | #pragma omp parallel for schedule(dynamic,64) private(i,j) shared(p,q,n) | packed.c: In function ‘triu’: packed.c:193: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 193 | #pragma omp parallel for schedule(dynamic,64) private(i,j) shared(A,n) | gcc-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o sortentries.o sortentries.c ar cr libsdp.a readprob.o sdp.o op_o.o psd_feas.o op_a.o op_at.o Fnorm.o calc_pobj.o calc_dobj.o trace_prod.o zero_mat.o mat_mult.o sym_mat.o copy_mat.o addscaledmat.o user_exit.o make_i.o allocmat.o initsoln.o initparams.o add_mat.o writesol.o readsol.o easysdp.o writeprob.o solvesys.o makefill.o mat_multsp.o norms.o linesearch.o matvec.o chol.o qreig.o tweakgap.o freeprob.o packed.o sortentries.o make[2]: Leaving directory '/home/hornik/tmp/scratch/RtmpogbJjK/R.INSTALL1479a32e502ef7/Bayesrel/src/Csdp/lib' g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -Wl,-O1 -o Bayesrel.so BayesrelCpp.o LowBoundsCpp.o RcppExports.o convertCpp.o customsdpCpp.o initArma.o pfaCpp.o -LCsdp/lib -lsdp -llapack -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -lm -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpogbJjK/R.INSTALL1479a32e502ef7/Bayesrel/src' make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpogbJjK/R.INSTALL1479a32e502ef7/Bayesrel/src' make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpogbJjK/R.INSTALL1479a32e502ef7/Bayesrel/src' installing to /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/00LOCK-Bayesrel/00new/Bayesrel/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * creating tarball packaged installation of ‘Bayesrel’ as ‘Bayesrel_0.7.7_R_x86_64-pc-linux-gnu.tar.gz’ * DONE (Bayesrel)