* installing to library ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages’ * installing *source* package ‘BayesXsrc’ ... ** package ‘BayesXsrc’ successfully unpacked and MD5 sums checked ** using staged installation ** libs make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpPmylxh/R.INSTALLb10b83db5a28c/BayesXsrc/src' `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14` `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14STD` -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bayesxsrc/andrea/baseline.cpp -o bayesxsrc/andrea/baseline.o bayesxsrc/andrea/baseline.cpp: In constructor ‘MCMC::pspline_baseline::pspline_baseline(MCMC::MCMCoptions*, MCMC::DISTRIBUTION*, MCMC::FULLCOND_const*, const datamatrix&, const datamatrix&, const unsigned int&, const unsigned int&, const MCMC::knotpos&, const double&, const unsigned int&, const unsigned int&, const MCMC::fieldtype&, const ST::string&, const ST::string&, const ST::string&, const int&, const unsigned int&, const datamatrix&)’: bayesxsrc/andrea/baseline.cpp:197:14: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 197 | for(i=0;i, unsigned int>::value_type’ {aka ‘unsigned int’} [-Wsign-compare] 1387 | for(j=0;j, unsigned int>::value_type’ {aka ‘unsigned int’} [-Wsign-compare] 1438 | if (j == matquant[blocksize-min]-2) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ bayesxsrc/andrea/baseline.cpp:1449:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1449 | for(i=0;iget_nrobs();i++) | ~^~~~~~~~~~~~~~~~~~~ bayesxsrc/andrea/baseline.cpp:1509:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 1509 | for(i=0;iget_nrobs();i++) | ~^~~~~~~~~~~~~~~~~~~ bayesxsrc/andrea/baseline.cpp:1530:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 1530 | for(i=0;iget_nrobs();i++,freqwork++,workindex++) | ~^~~~~~~~~~~~~~~~~~~ `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14` `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14STD` -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bayesxsrc/andrea/cox.cpp -o bayesxsrc/andrea/cox.o `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14` `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14STD` -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bayesxsrc/andrea/IWLS_baseline.cpp -o bayesxsrc/andrea/IWLS_baseline.o In file included from bayesxsrc/bib/envmatrix.h:484, from bayesxsrc/mcmc/mcmc_nonpbasis.h:33, from bayesxsrc/andrea/IWLS_baseline.h:31, from bayesxsrc/andrea/IWLS_baseline.cpp:20: bayesxsrc/bib/envmatrix.cpp: In instantiation of ‘void envmatrix::decomp() [with T = double]’: bayesxsrc/bib/envmatrix.cpp:2099:5: required from ‘void envmatrix::solveU(datamatrix&, const datamatrix&) [with T = double; datamatrix = statmatrix]’ bayesxsrc/andrea/IWLS_baseline.cpp:497:18: required from here bayesxsrc/bib/envmatrix.cpp:568:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 568 | kget_nrobs();i++,freqwork++,workindex++) | ~^~~~~~~~~~~~~~~~~~~ bayesxsrc/andrea/multibaseline.cpp:207:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 207 | for(i=0;iget_nrobs();i++,freqwork++,workindex++) | ~^~~~~~~~~~~~~~~~~~~ bayesxsrc/andrea/multibaseline.cpp:438:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 438 | for(i=0;iget_nrobs();i++,freqwork++,workindex++) | ~^~~~~~~~~~~~~~~~~~~ `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14` `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14STD` -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bayesxsrc/andrea/multistate.cpp -o bayesxsrc/andrea/multistate.o `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14` `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14STD` -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bayesxsrc/bib/Random.cpp -o bayesxsrc/bib/Random.o bayesxsrc/bib/Random.cpp: In function ‘double randnumbers::pbivnu(const double&, const double&, const double&)’: bayesxsrc/bib/Random.cpp:1223:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 1223 | for(int j=0; j') && (i+1 < len) && (str[i+1] == '=') ) | ~~~~^~~~~ bayesxsrc/bib/clstring.cpp:602:44: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 602 | else if ( (str[i] == '<') && (i+1 < len) && (str[i+1] == '=') ) | ~~~~^~~~~ bayesxsrc/bib/clstring.cpp:612:44: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 612 | else if ( (str[i] == '!') && (i+1 < len) && (str[i+1] == '=') ) | ~~~~^~~~~ bayesxsrc/bib/clstring.cpp: In member function ‘int ST::string::isfunction(ST::string&, ST::string&) const’: bayesxsrc/bib/clstring.cpp:678:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 678 | if (endbr == len-1) | ~~~~~~^~~~~~~~ bayesxsrc/bib/clstring.cpp: In member function ‘int ST::string::issubscribing(ST::string&, ST::string&) const’: bayesxsrc/bib/clstring.cpp:703:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 703 | if (endbr == len-1) | ~~~~~~^~~~~~~~ bayesxsrc/bib/clstring.cpp: In member function ‘int ST::string::isint() const’: bayesxsrc/bib/clstring.cpp:807:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 807 | while ((i < len) && (h == 1)) | ~~^~~~~ bayesxsrc/bib/clstring.cpp: In member function ‘std::vector ST::string::strtoken(const ST::string&, bool) const’: bayesxsrc/bib/clstring.cpp:979:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 979 | while (i < len) | ~~^~~~~ bayesxsrc/bib/clstring.cpp:983:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 983 | while ( (i < len) && (str[i] == ' ') ) | ~~^~~~~ bayesxsrc/bib/clstring.cpp:994:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 994 | while ( (i < len) && (parsingsigns.checksign(str[i]) == -1) ) | ~~^~~~~ bayesxsrc/bib/clstring.cpp: In member function ‘int ST::string::strtoken_quot(std::vector&, const ST::string&, bool) const’: bayesxsrc/bib/clstring.cpp:1013:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 1013 | while (i < len) | ~~^~~~~ bayesxsrc/bib/clstring.cpp:1017:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 1017 | while ( (i < len) && (str[i] == ' ') ) | ~~^~~~~ bayesxsrc/bib/clstring.cpp:1031:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 1031 | while ( (i < len) && (parsingsigns.checksign(str[i]) == -1) ) | ~~^~~~~ bayesxsrc/bib/clstring.cpp:1039:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 1039 | while ( ( i< len) && (str[i] != '"') ) | ~^~~~~ bayesxsrc/bib/clstring.cpp:1042:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 1042 | if ( ( i < len) && (str[i] == '"') ) | ~~^~~~~ bayesxsrc/bib/clstring.cpp: In member function ‘std::vector ST::string::strtoken2(const ST::string&, bool&) const’: bayesxsrc/bib/clstring.cpp:1072:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 1072 | while (i < len) | ~~^~~~~ bayesxsrc/bib/clstring.cpp:1095:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 1095 | if (anf < len) | ~~~~^~~~~ bayesxsrc/bib/clstring.cpp: In member function ‘std::vector ST::string::strtoken2_quot(const ST::string&, bool&, bool&) const’: bayesxsrc/bib/clstring.cpp:1117:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 1117 | while (i < len) | ~~^~~~~ bayesxsrc/bib/clstring.cpp:1133:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 1133 | while ( ( i< len) && (str[i] != '"') ) | ~^~~~~ bayesxsrc/bib/clstring.cpp:1136:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 1136 | if ( ( i < len) && (str[i] == '"') ) | ~~^~~~~ bayesxsrc/bib/clstring.cpp:1154:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 1154 | if (anf < len) | ~~~~^~~~~ bayesxsrc/bib/clstring.cpp: In member function ‘std::__cxx11::list ST::string::strtokenlist(const ST::string&, bool) const’: bayesxsrc/bib/clstring.cpp:1252:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 1252 | while (i < len) | ~~^~~~~ bayesxsrc/bib/clstring.cpp:1256:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 1256 | while ( (i < len) && (str[i] == ' ') ) | ~~^~~~~ bayesxsrc/bib/clstring.cpp:1267:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 1267 | while ( (i < len) && (parsingsigns.checksign(str[i]) == -1) ) | ~~^~~~~ `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14` `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14STD` -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bayesxsrc/bib/command.cpp -o bayesxsrc/bib/command.o `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14` `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14STD` -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bayesxsrc/bib/data.cpp -o bayesxsrc/bib/data.o bayesxsrc/bib/data.cpp: In member function ‘void dataset::filldata(std::istream&, ST::string&, const unsigned int&)’: bayesxsrc/bib/data.cpp:370:21: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 370 | if ((*i).size() != o) | ~~~~~~~~~~~~^~~~ bayesxsrc/bib/data.cpp:370:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 370 | if ((*i).size() != o) | ^~ bayesxsrc/bib/data.cpp:373:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 373 | i++; | ^ bayesxsrc/bib/data.cpp: In member function ‘void dataset::marketing(std::vector&, ST::string&, int&, double&)’: bayesxsrc/bib/data.cpp:1497:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1497 | while(j&, std::vector&)’: bayesxsrc/bib/dataobj.cpp:210:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 210 | while (i::size_type’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 204 | if( (i==weightcheck) && (token.size()==2*edgesi) ) | ~~~~~~~~~~~~^~~~~~~~~~ bayesxsrc/bib/graph.cpp:217:28: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 217 | if (token.size() == edgesi) | ~~~~~~~~~~~~~^~~~~~~~~ bayesxsrc/bib/graph.cpp:246:28: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 246 | if (token.size() == edgesi*2) | ~~~~~~~~~~~~~^~~~~~~~~~~ `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14` `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14STD` -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bayesxsrc/bib/map.cpp -o bayesxsrc/bib/map.o bayesxsrc/bib/map.cpp: In constructor ‘MAP::map::map(const datamatrix&, const double&, const MAP::metric&)’: bayesxsrc/bib/map.cpp:687:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 687 | for (i=1;i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 838 | for(j=0;j::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 850 | for(j=0;j::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 862 | for(j=0;j >&, std::vector >&, std::vector&, statmatrix&)’: bayesxsrc/bib/map.cpp:1901:45: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits, int>::value_type’ {aka ‘int’} [-Wsign-compare] 1901 | for(i=posbeghelp[inveffindex(j,0)];i<=posendhelp[inveffindex(j,0)];i++) `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14` `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14STD` -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bayesxsrc/bib/mapobject.cpp -o bayesxsrc/bib/mapobject.o `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14` `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14STD` -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bayesxsrc/bib/model.cpp -o bayesxsrc/bib/model.o `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14` `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14STD` -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bayesxsrc/bib/model_remlreg.cpp -o bayesxsrc/bib/model_remlreg.o `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14` `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14STD` -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bayesxsrc/bib/model_stepwise.cpp -o bayesxsrc/bib/model_stepwise.o `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14` `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14STD` -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bayesxsrc/bib/option.cpp -o bayesxsrc/bib/option.o bayesxsrc/bib/option.cpp: In member function ‘virtual int stroption::parse(const ST::string&)’: bayesxsrc/bib/option.cpp:364:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 364 | while ((i < admissible.size()) && (h == -1)) | ~~^~~~~~~~~~~~~~~~~~~ bayesxsrc/bib/option.cpp: In member function ‘void optionlist::parsemultiple(const ST::string&)’: bayesxsrc/bib/option.cpp:663:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 663 | while (j < token.size()) | ~~^~~~~~~~~~~~~~ bayesxsrc/bib/option.cpp:694:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 694 | while ( (j&)’: bayesxsrc/bib/sparsemat.cpp:218:25: warning: comparison of integer expressions of different signedness: ‘const int’ and ‘unsigned int’ [-Wsign-compare] 218 | if (index(k,0) == c) | ~~~~~~~~~~~^~~~ `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14` `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14STD` -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bayesxsrc/bib/statmat.cpp -o bayesxsrc/bib/statmat.o `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14` `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14STD` -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bayesxsrc/bib/statmat_penalty.cpp -o bayesxsrc/bib/statmat_penalty.o `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14` `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14STD` -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bayesxsrc/bib/statobj.cpp -o bayesxsrc/bib/statobj.o bayesxsrc/bib/statobj.cpp: In function ‘int findstatobject(const std::vector&, const ST::string&, const ST::string&)’: bayesxsrc/bib/statobj.cpp:159:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 159 | while ( (i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 4373 | for (j=0;j::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 163 | while ( (i < datasets->size()) && (existing == false) ) | ~~^~~~~~~~~~~~~~~~~~ `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14` `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14STD` -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bayesxsrc/bib/vectorn.cpp -o bayesxsrc/bib/vectorn.o `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14` `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14STD` -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bayesxsrc/dag/adjacency.cpp -o bayesxsrc/dag/adjacency.o `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14` `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14STD` -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bayesxsrc/dag/dagobject.cpp -o bayesxsrc/dag/dagobject.o `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14` `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14STD` -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bayesxsrc/dag/fullcond_dag.cpp -o bayesxsrc/dag/fullcond_dag.o `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14` `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14STD` -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bayesxsrc/dag/fullcond_dag_d.cpp -o bayesxsrc/dag/fullcond_dag_d.o `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14` `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14STD` -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bayesxsrc/dag/fullcond_dag_ia.cpp -o bayesxsrc/dag/fullcond_dag_ia.o `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14` `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14STD` -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bayesxsrc/dag/fullcond_dag_ia_mixed.cpp -o bayesxsrc/dag/fullcond_dag_ia_mixed.o `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14` `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14STD` -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bayesxsrc/dag/fullcond_rj.cpp -o bayesxsrc/dag/fullcond_rj.o bayesxsrc/dag/fullcond_rj.cpp: In member function ‘void MCMC::FULLCOND_rj::outres_dags()’: bayesxsrc/dag/fullcond_rj.cpp:1486:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1486 | for(k=freq_size-1; k>=freq_size-limit_number; k--) | ~^~~~~~~~~~~~~~~~~~~~~~~~ bayesxsrc/dag/fullcond_rj.cpp:1570:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1570 | for(k=freq_size-1; k>=freq_size-limit_number; k--) | ~^~~~~~~~~~~~~~~~~~~~~~~~ bayesxsrc/dag/fullcond_rj.cpp: In member function ‘void MCMC::FULLCOND_rj::outres_essentials()’: bayesxsrc/dag/fullcond_rj.cpp:1661:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1661 | for(k=list_size-1; k>=list_size-limit_number; k--) | ~^~~~~~~~~~~~~~~~~~~~~~~~ bayesxsrc/dag/fullcond_rj.cpp:1745:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1745 | for(k=list_size-1; k>=list_size-limit_number; k--) | ~^~~~~~~~~~~~~~~~~~~~~~~~ bayesxsrc/dag/fullcond_rj.cpp: In member function ‘void MCMC::FULLCOND_rj::write_out_resfile()’: bayesxsrc/dag/fullcond_rj.cpp:1880:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1880 | for(i=0; i statmatrix::corr() [with T = double]’: bayesxsrc/dag/fullcond_rj.cpp:1378:31: required from here bayesxsrc/bib/statmat.cpp:1334:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1334 | for (i=0;i statmatrix::get_cov_iX(int, int) [with T = double]’: bayesxsrc/bib/statmat.cpp:1518:37: required from ‘statmatrix statmatrix::partial_var() [with T = double]’ bayesxsrc/dag/fullcond_rj.cpp:1379:39: required from here bayesxsrc/bib/statmat.cpp:1421:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1421 | for(k=0; krows(); k++) | ~^~~~~~~~~~~~~ `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14` `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14STD` -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bayesxsrc/dag/fullcond_rj_int.cpp -o bayesxsrc/dag/fullcond_rj_int.o `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14` `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14STD` -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bayesxsrc/dag/fullcond_rj_mix.cpp -o bayesxsrc/dag/fullcond_rj_mix.o `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14` `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14STD` -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bayesxsrc/dag/func_dag.cpp -o bayesxsrc/dag/func_dag.o `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14` `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14STD` -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bayesxsrc/dag/ia.cpp -o bayesxsrc/dag/ia.o `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14` `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14STD` -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bayesxsrc/dag/ia_mixed.cpp -o bayesxsrc/dag/ia_mixed.o `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14` `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14STD` -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bayesxsrc/leyre/nbinomial.cpp -o bayesxsrc/leyre/nbinomial.o `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14` `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14STD` -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bayesxsrc/leyre/zip.cpp -o bayesxsrc/leyre/zip.o `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14` `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14STD` -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bayesxsrc/mcmc/baseline_reml.cpp -o bayesxsrc/mcmc/baseline_reml.o bayesxsrc/mcmc/baseline_reml.cpp: In member function ‘void MCMC::baseline_reml::multDG(datamatrix&, const datamatrix&)’: bayesxsrc/mcmc/baseline_reml.cpp:392:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 392 | for(i=0;i::rank(statmatrix&, statmatrix&, int, int, int) const [with T = double]’: bayesxsrc/mcmc/distribution.cpp:6656:20: required from here bayesxsrc/bib/statmat.cpp:887:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 887 | while(i<=ende-start) | ~^~~~~~~~~~~~ bayesxsrc/bib/statmat.cpp:890:14: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 890 | while( (i<=ende-start) && (this->get(index(i,0),col)-this->get(index(i-1,0),col))::operator()(unsigned int, unsigned int) [with T = int]’, inlined from ‘T statmatrix::quantile(const T&, const unsigned int&) const [with T = double]’ at bayesxsrc/bib/statmat.cpp:1158:28: bayesxsrc/bib/tarray2d.h:218:24: warning: ‘index.statmatrix::.Matrix::.PreMatrix::.Array2D::m_row’ may be used uninitialized [-Wmaybe-uninitialized] 218 | return m_row[ i ][ j ]; | ^~~~~ In file included from bayesxsrc/bib/statmat.h:495: bayesxsrc/bib/statmat.cpp: In function ‘T statmatrix::quantile(const T&, const unsigned int&) const [with T = double]’: bayesxsrc/bib/statmat.cpp:1153:19: note: ‘index’ declared here 1153 | statmatrix index(this->rows(),1); | ^~~~~ `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14` `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14STD` -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bayesxsrc/mcmc/fullcond_merror.cpp -o bayesxsrc/mcmc/fullcond_merror.o bayesxsrc/mcmc/fullcond_merror.cpp: In constructor ‘MCMC::fullcond_merror::fullcond_merror(MCMC::MCMCoptions*, MCMC::spline_basis*, MCMC::DISTRIBUTION*, const datamatrix&, const ST::string&, const ST::string&, const ST::string&, const double&, const double&, datamatrix&, const bool&, const int&, const unsigned int&)’: bayesxsrc/mcmc/fullcond_merror.cpp:285:15: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 285 | for(j=0; j&, unsigned int, unsigned int, MCMC::effecttype)’: bayesxsrc/mcmc/fullcond_nonp_gaussian.cpp:3613:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 3613 | for (k=(*itbeg);k<=(*itend);k++,workindex++) | ~^~~~~~~~~~ In file included from bayesxsrc/bib/envmatrix.h:484, from bayesxsrc/mcmc/mcmc_nonpbasis.h:33, from bayesxsrc/mcmc/fullcond_nonp_gaussian.h:27, from bayesxsrc/mcmc/fullcond_nonp_gaussian.cpp:22: bayesxsrc/bib/envmatrix.cpp: In instantiation of ‘void envmatrix::decomp() [with T = double]’: bayesxsrc/bib/envmatrix.cpp:2099:5: required from ‘void envmatrix::solveU(datamatrix&, const datamatrix&) [with T = double; datamatrix = statmatrix]’ bayesxsrc/mcmc/fullcond_nonp_gaussian.cpp:2382:17: required from here bayesxsrc/bib/envmatrix.cpp:568:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 568 | k::inverse_envelope(envmatrix&) [with T = double]’: bayesxsrc/mcmc/fullcond_nonp_gaussian_stepwise.cpp:505:41: required from here bayesxsrc/bib/envmatrix.cpp:2384:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2384 | if(dim-i+k::decomp() [with T = double]’: bayesxsrc/mcmc/fullcond_nonp_gaussian_stepwise.cpp:980:21: required from here bayesxsrc/bib/envmatrix.cpp:568:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 568 | k::getL(const unsigned int&, const unsigned int&) const [with T = double]’: bayesxsrc/bib/envmatrix.cpp:2369:38: required from ‘void envmatrix::inverse_envelope(envmatrix&) [with T = double]’ bayesxsrc/mcmc/fullcond_nonp_gaussian_stepwise.cpp:505:41: required from here bayesxsrc/bib/envmatrix.cpp:2504:8: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2504 | if(jh::decomp() [with T = double]’: bayesxsrc/bib/envmatrix.cpp:2099:5: required from ‘void envmatrix::solveU(datamatrix&, const datamatrix&) [with T = double; datamatrix = statmatrix]’ bayesxsrc/mcmc/kriging2.cpp:900:18: required from here bayesxsrc/bib/envmatrix.cpp:568:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 568 | k::solveL(const datamatrix&, datamatrix&) [with T = double; datamatrix = statmatrix]’: bayesxsrc/mcmc/mcmc_nonp.cpp:1550:14: required from here bayesxsrc/bib/bandmat.cpp:987:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 987 | for (j=0;j+i+1<=p;j++) | ~~~~~^~~ bayesxsrc/bib/bandmat.cpp: In instantiation of ‘void symbandmatrix::decomp() [with T = double]’: bayesxsrc/bib/bandmat.cpp:943:5: required from ‘void symbandmatrix::solveL(const datamatrix&, datamatrix&) [with T = double; datamatrix = statmatrix]’ bayesxsrc/mcmc/mcmc_nonp.cpp:1550:14: required from here bayesxsrc/bib/bandmat.cpp:592:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 592 | for (k=0;k::decomp() [with T = double]’: bayesxsrc/bib/envmatrix.cpp:2589:5: required from ‘T envmatrix::getLogDet() [with T = double]’ bayesxsrc/mcmc/mcmc_nonpbasis.cpp:316:24: required from here bayesxsrc/bib/envmatrix.cpp:568:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 568 | k&, const ST::string&, const ST::string&)’: bayesxsrc/mcmc/randomeffect.cpp:100:5: warning: variable ‘h’ set but not used [-Wunused-but-set-variable] 100 | int h; | ^ bayesxsrc/mcmc/randomeffect.cpp: In member function ‘void MCMC::FULLCOND_random::update_linpred_diff(datamatrix&, datamatrix&)’: bayesxsrc/mcmc/randomeffect.cpp:1233:20: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 1233 | if (*itbeg != -1) | ~~~~~~~^~~~~ bayesxsrc/mcmc/randomeffect.cpp:1249:20: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 1249 | if (*itbeg != -1) | ~~~~~~~^~~~~ bayesxsrc/mcmc/randomeffect.cpp:1268:18: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 1268 | if (*itbeg != -1) | ~~~~~~~^~~~~ bayesxsrc/mcmc/randomeffect.cpp: In member function ‘virtual void MCMC::FULLCOND_random::update_linpred(const bool&)’: bayesxsrc/mcmc/randomeffect.cpp:1292:20: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 1292 | if (*itbeg != -1) | ~~~~~~~^~~~~ bayesxsrc/mcmc/randomeffect.cpp:1307:22: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 1307 | if (*itbeg != -1) | ~~~~~~~^~~~~ bayesxsrc/mcmc/randomeffect.cpp:1323:22: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 1323 | if (*itbeg != -1) | ~~~~~~~^~~~~ bayesxsrc/mcmc/randomeffect.cpp:1345:20: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 1345 | if (*itbeg != -1) | ~~~~~~~^~~~~ bayesxsrc/mcmc/randomeffect.cpp:1360:22: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 1360 | if (*itbeg != -1) | ~~~~~~~^~~~~ bayesxsrc/mcmc/randomeffect.cpp:1374:22: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 1374 | if (*itbeg != -1) | ~~~~~~~^~~~~ bayesxsrc/mcmc/randomeffect.cpp: In member function ‘virtual void MCMC::FULLCOND_random::get_effectmatrix(datamatrix&, std::vector&, unsigned int, unsigned int, MCMC::effecttype)’: bayesxsrc/mcmc/randomeffect.cpp:1443:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1443 | for(j=*itbeg;j<=*itend;j++,workindex++) | ~^~~~~~~~ bayesxsrc/mcmc/randomeffect.cpp:1435:16: warning: variable ‘n’ set but not used [-Wunused-but-set-variable] 1435 | unsigned n; | ^ `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14` `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14STD` -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bayesxsrc/mcmc/randomeffect_stepwise.cpp -o bayesxsrc/mcmc/randomeffect_stepwise.o bayesxsrc/mcmc/randomeffect_stepwise.cpp: In member function ‘virtual void MCMC::FULLCOND_random_stepwise::create_weight(datamatrix&)’: bayesxsrc/mcmc/randomeffect_stepwise.cpp:313:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 313 | if(*itbeg != -1) | ~~~~~~~^~~~~ bayesxsrc/mcmc/randomeffect_stepwise.cpp: In member function ‘virtual void MCMC::FULLCOND_random_stepwise::update_bootstrap(const bool&)’: bayesxsrc/mcmc/randomeffect_stepwise.cpp:668:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 668 | if(*itbeg != -1) | ~~~~~~~^~~~~ bayesxsrc/mcmc/randomeffect_stepwise.cpp: In member function ‘virtual void MCMC::FULLCOND_random_stepwise::save_betamean()’: bayesxsrc/mcmc/randomeffect_stepwise.cpp:747:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 747 | if(*itbeg != -1) | ~~~~~~~^~~~~ bayesxsrc/mcmc/randomeffect_stepwise.cpp: In member function ‘virtual void MCMC::FULLCOND_random_stepwise::update()’: bayesxsrc/mcmc/randomeffect_stepwise.cpp:894:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 894 | if(*itbeg != -1) | ~~~~~~~^~~~~ `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14` `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14STD` -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bayesxsrc/mcmc/remlest.cpp -o bayesxsrc/mcmc/remlest.o `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14` `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14STD` -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bayesxsrc/mcmc/remlest_multi.cpp -o bayesxsrc/mcmc/remlest_multi.o bayesxsrc/mcmc/remlest_multi.cpp: In constructor ‘remlest_multinomial::remlest_multinomial(std::vector&, datamatrix&, const ST::string&, const ST::string&, const int&, const double&, const double&, const double&, const double&, const datamatrix&, const datamatrix&, const bool&, std::ostream*)’: bayesxsrc/mcmc/remlest_multi.cpp:50:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 50 | for(int i=0; i&, datamatrix&, const ST::string&, const ST::string&, const int&, const double&, const double&, const double&, const double&, const datamatrix&, const datamatrix&, const bool&, std::ostream*)’: bayesxsrc/mcmc/remlest_multi2.cpp:50:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 50 | for(int i=0; i&, datamatrix&, const ST::string&, const ST::string&, const int&, const double&, const double&, const double&, const double&, const datamatrix&, const datamatrix&, const bool&, std::ostream*)’: bayesxsrc/mcmc/remlest_multi3.cpp:51:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 51 | for(int i=0; i::decomp2(unsigned int) [with T = double]’: bayesxsrc/mcmc/tvariance2dim.cpp:294:22: required from here bayesxsrc/bib/envmatrix.cpp:1141:15: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 1141 | if(start<=bandwidth) | ~~~~~^~~~~~~~~~~ bayesxsrc/bib/envmatrix.cpp:1223:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1223 | if(kband > k) | ~~~~~~^~~ bayesxsrc/bib/envmatrix.cpp: In instantiation of ‘void envmatrix::decomp() [with T = double]’: bayesxsrc/bib/envmatrix.cpp:2589:5: required from ‘T envmatrix::getLogDet() [with T = double]’ bayesxsrc/mcmc/tvariance2dim.cpp:60:27: required from here bayesxsrc/bib/envmatrix.cpp:568:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 568 | k::decomp() [with T = double]’: bayesxsrc/bib/envmatrix.cpp:2099:5: required from ‘void envmatrix::solveU(datamatrix&, const datamatrix&) [with T = double; datamatrix = statmatrix]’ bayesxsrc/psplines/IWLS_pspline.cpp:621:18: required from here bayesxsrc/bib/envmatrix.cpp:568:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 568 | k::mult(const statmatrix&, statmatrix&) const [with T = double]’: bayesxsrc/psplines/fullcond_pspline_gaussian.cpp:358:13: required from here bayesxsrc/bib/bandmat.cpp:1420:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 1420 | if (end >= dim) | ~~~~^~~~~~ bayesxsrc/bib/bandmat.cpp:1423:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 1423 | for (k = beg; k <= end; k++) | ~~^~~~~~ In file included from bayesxsrc/bib/envmatrix.h:484, from bayesxsrc/mcmc/mcmc_nonpbasis.h:33: bayesxsrc/bib/envmatrix.cpp: In instantiation of ‘void envmatrix::decomp() [with T = double]’: bayesxsrc/bib/envmatrix.cpp:2099:5: required from ‘void envmatrix::solveU(datamatrix&, const datamatrix&) [with T = double; datamatrix = statmatrix]’ bayesxsrc/psplines/fullcond_pspline_gaussian.cpp:365:20: required from here bayesxsrc/bib/envmatrix.cpp:568:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 568 | k::operator()(unsigned int, unsigned int) [with T = int]’, inlined from ‘T statmatrix::quantile(const T&, const unsigned int&) const [with T = double]’ at bayesxsrc/bib/statmat.cpp:1158:28: bayesxsrc/bib/tarray2d.h:218:24: warning: ‘index.statmatrix::.Matrix::.PreMatrix::.Array2D::m_row’ may be used uninitialized [-Wmaybe-uninitialized] 218 | return m_row[ i ][ j ]; | ^~~~~ In file included from bayesxsrc/bib/statmat.h:495: bayesxsrc/bib/statmat.cpp: In function ‘T statmatrix::quantile(const T&, const unsigned int&) const [with T = double]’: bayesxsrc/bib/statmat.cpp:1153:19: note: ‘index’ declared here 1153 | statmatrix index(this->rows(),1); | ^~~~~ `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14` `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14STD` -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bayesxsrc/psplines/fullcond_pspline_stepwise.cpp -o bayesxsrc/psplines/fullcond_pspline_stepwise.o bayesxsrc/psplines/fullcond_pspline_stepwise.cpp: In member function ‘virtual void MCMC::FULLCOND_pspline_stepwise::change_Korder(double)’: bayesxsrc/psplines/fullcond_pspline_stepwise.cpp:1817:7: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1817 | if((decreasing || increasing) && type==RW2 && spline.var(0)==0) | ^~ bayesxsrc/psplines/fullcond_pspline_stepwise.cpp:1819:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1819 | rankK = nrpar-1; | ^~~~~ bayesxsrc/psplines/fullcond_pspline_stepwise.cpp: In member function ‘void MCMC::FULLCOND_pspline_stepwise::update_gauss()’: bayesxsrc/psplines/fullcond_pspline_stepwise.cpp:2009:20: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2009 | for(i=0;i::inverse_envelope(envmatrix&) [with T = double]’: bayesxsrc/psplines/fullcond_pspline_stepwise.cpp:986:34: required from here bayesxsrc/bib/envmatrix.cpp:2384:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2384 | if(dim-i+k::decomp() [with T = double]’: bayesxsrc/psplines/fullcond_pspline_stepwise.cpp:1152:22: required from here bayesxsrc/bib/envmatrix.cpp:568:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 568 | k::getL(const unsigned int&, const unsigned int&) const [with T = double]’: bayesxsrc/bib/envmatrix.cpp:2369:38: required from ‘void envmatrix::inverse_envelope(envmatrix&) [with T = double]’ bayesxsrc/psplines/fullcond_pspline_stepwise.cpp:986:34: required from here bayesxsrc/bib/envmatrix.cpp:2504:8: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2504 | if(jh::solveL(const datamatrix&, datamatrix&) [with T = double; datamatrix = statmatrix]’: bayesxsrc/psplines/fullcond_pspline_surf_gaussian.cpp:1625:18: required from here bayesxsrc/bib/bandmat.cpp:987:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 987 | for (j=0;j+i+1<=p;j++) | ~~~~~^~~ bayesxsrc/bib/bandmat.cpp: In instantiation of ‘void symbandmatrix::solve(const statmatrix&, statmatrix&, const unsigned int&, const unsigned int&) [with T = double]’: bayesxsrc/psplines/fullcond_pspline_surf_gaussian.cpp:1628:17: required from here bayesxsrc/bib/bandmat.cpp:1047:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1047 | for(i=1;i::inverse_envelope(envmatrix&) [with T = double]’: bayesxsrc/psplines/fullcond_pspline_surf_gaussian.cpp:2754:28: required from here bayesxsrc/bib/envmatrix.cpp:2384:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2384 | if(dim-i+k::decomp() [with T = double]’: bayesxsrc/bib/envmatrix.cpp:2099:5: required from ‘void envmatrix::solveU(datamatrix&, const datamatrix&) [with T = double; datamatrix = statmatrix]’ bayesxsrc/psplines/fullcond_pspline_surf_gaussian.cpp:842:20: required from here bayesxsrc/bib/envmatrix.cpp:568:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 568 | k::decomp() [with T = double]’: bayesxsrc/bib/bandmat.cpp:943:5: required from ‘void symbandmatrix::solveL(const datamatrix&, datamatrix&) [with T = double; datamatrix = statmatrix]’ bayesxsrc/psplines/fullcond_pspline_surf_gaussian.cpp:1625:18: required from here bayesxsrc/bib/bandmat.cpp:592:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 592 | for (k=0;k::getL(const unsigned int&, const unsigned int&) const [with T = double]’: bayesxsrc/bib/envmatrix.cpp:2369:38: required from ‘void envmatrix::inverse_envelope(envmatrix&) [with T = double]’ bayesxsrc/psplines/fullcond_pspline_surf_gaussian.cpp:2754:28: required from here bayesxsrc/bib/envmatrix.cpp:2504:8: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2504 | if(jh::decomp() [with T = double]’: bayesxsrc/psplines/fullcond_pspline_surf_stepwise.cpp:972:22: required from here bayesxsrc/bib/envmatrix.cpp:568:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 568 | k::inverse_envelope(envmatrix&) [with T = double]’: bayesxsrc/psplines/fullcond_pspline_surf_stepwise.cpp:1116:34: required from here bayesxsrc/bib/envmatrix.cpp:2384:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2384 | if(dim-i+k::solveL(const datamatrix&, datamatrix&) [with T = double; datamatrix = statmatrix]’: bayesxsrc/psplines/fullcond_pspline_surf_stepwise.cpp:1896:16: required from here bayesxsrc/bib/bandmat.cpp:987:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 987 | for (j=0;j+i+1<=p;j++) | ~~~~~^~~ bayesxsrc/bib/bandmat.cpp: In instantiation of ‘void symbandmatrix::solve(const statmatrix&, statmatrix&, const unsigned int&, const unsigned int&) [with T = double]’: bayesxsrc/psplines/fullcond_pspline_surf_stepwise.cpp:1899:15: required from here bayesxsrc/bib/bandmat.cpp:1047:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1047 | for(i=1;i::getL(const unsigned int&, const unsigned int&) const [with T = double]’: bayesxsrc/bib/envmatrix.cpp:2369:38: required from ‘void envmatrix::inverse_envelope(envmatrix&) [with T = double]’ bayesxsrc/psplines/fullcond_pspline_surf_stepwise.cpp:1116:34: required from here bayesxsrc/bib/envmatrix.cpp:2504:8: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2504 | if(jh::decomp() [with T = double]’: bayesxsrc/bib/bandmat.cpp:943:5: required from ‘void symbandmatrix::solveL(const datamatrix&, datamatrix&) [with T = double; datamatrix = statmatrix]’ bayesxsrc/psplines/fullcond_pspline_surf_stepwise.cpp:1896:16: required from here bayesxsrc/bib/bandmat.cpp:592:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 592 | for (k=0;krankK) | ~~~^~~~~~ In file included from bayesxsrc/bib/tpremat.h:31, from bayesxsrc/bib/tmatrix.h:34, from bayesxsrc/bib/statmat.h:26, from bayesxsrc/mcmc/mcmc.h:27, from bayesxsrc/psplines/mcmc_pspline.h:26, from bayesxsrc/psplines/mcmc_pspline.cpp:22: In member function ‘T& Array2D::operator()(unsigned int, unsigned int) [with T = int]’, inlined from ‘T statmatrix::quantile(const T&, const unsigned int&) const [with T = double]’ at bayesxsrc/bib/statmat.cpp:1158:28: bayesxsrc/bib/tarray2d.h:218:24: warning: ‘index.statmatrix::.Matrix::.PreMatrix::.Array2D::m_row’ may be used uninitialized [-Wmaybe-uninitialized] 218 | return m_row[ i ][ j ]; | ^~~~~ In file included from bayesxsrc/bib/statmat.h:495: bayesxsrc/bib/statmat.cpp: In function ‘T statmatrix::quantile(const T&, const unsigned int&) const [with T = double]’: bayesxsrc/bib/statmat.cpp:1153:19: note: ‘index’ declared here 1153 | statmatrix index(this->rows(),1); | ^~~~~ `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14` `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14STD` -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bayesxsrc/psplines/mcmc_pspline_surf.cpp -o bayesxsrc/psplines/mcmc_pspline_surf.o bayesxsrc/psplines/mcmc_pspline_surf.cpp: In member function ‘virtual void MCMC::FULLCOND_pspline_surf::update()’: bayesxsrc/psplines/mcmc_pspline_surf.cpp:1000:74: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1000 | while(firstit != first.end() && end < likep->get_nrobs() && *firstit < en) | ~~~~~~~~~^~~~ bayesxsrc/psplines/mcmc_pspline_surf.cpp:1091:20: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 1091 | for(k=0;kFULLCOND_pspline_surf::max) | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14` `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14STD` -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bayesxsrc/psplines/spline_basis.cpp -o bayesxsrc/psplines/spline_basis.o bayesxsrc/psplines/spline_basis.cpp: In member function ‘virtual void MCMC::spline_basis::get_effectmatrix(datamatrix&, std::vector&, unsigned int, unsigned int, MCMC::effecttype)’: bayesxsrc/psplines/spline_basis.cpp:180:12: warning: variable ‘worksplinehelp’ set but not used [-Wunused-but-set-variable] 180 | double * worksplinehelp; | ^~~~~~~~~~~~~~ bayesxsrc/psplines/spline_basis.cpp: In constructor ‘MCMC::spline_basis::spline_basis(MCMC::MCMCoptions*, const datamatrix&, const unsigned int&, const unsigned int&, const MCMC::knotpos&, const MCMC::fieldtype&, const ST::string&, const ST::string&, const ST::string&, const double&, const double&, const bool&, const double&, const double&, const double&, const double&, const int&, const double&)’: bayesxsrc/psplines/spline_basis.cpp:445:15: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 445 | for(j=1; j::solve(const statmatrix&, statmatrix&, const unsigned int&, const unsigned int&) [with T = double]’: bayesxsrc/psplines/spline_basis.cpp:3057:15: required from here bayesxsrc/bib/bandmat.cpp:1047:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1047 | for(i=1;i::inverse_envelope(envmatrix&) [with T = double]’: bayesxsrc/psplines/spline_basis.cpp:3240:28: required from here bayesxsrc/bib/envmatrix.cpp:2384:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2384 | if(dim-i+k::decomp() [with T = double]’: bayesxsrc/psplines/spline_basis.cpp:3258:16: required from here bayesxsrc/bib/envmatrix.cpp:568:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 568 | k::getL(const unsigned int&, const unsigned int&) const [with T = double]’: bayesxsrc/psplines/spline_basis.cpp:3261:27: required from here bayesxsrc/bib/envmatrix.cpp:2504:8: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2504 | if(jh::mult(const statmatrix&, statmatrix&) const [with T = double]’: bayesxsrc/psplines/spline_basis.cpp:3264:9: required from here bayesxsrc/bib/bandmat.cpp:1420:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 1420 | if (end >= dim) | ~~~~^~~~~~ bayesxsrc/bib/bandmat.cpp:1423:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 1423 | for (k = beg; k <= end; k++) | ~~^~~~~~ bayesxsrc/bib/bandmat.cpp: In instantiation of ‘void symbandmatrix::decomp() [with T = double]’: bayesxsrc/bib/bandmat.cpp:1037:5: required from ‘void symbandmatrix::solve(const statmatrix&, statmatrix&, const unsigned int&, const unsigned int&) [with T = double]’ bayesxsrc/psplines/spline_basis.cpp:3057:15: required from here bayesxsrc/bib/bandmat.cpp:592:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 592 | for (k=0;k&, std::vector&)’: bayesxsrc/structadd/FC_hrandom_variance.cpp:38:7: warning: variable ‘f’ set but not used [-Wunused-but-set-variable] 38 | int f; | ^ bayesxsrc/structadd/FC_hrandom_variance.cpp: In member function ‘virtual void MCMC::FC_hrandom_variance_ssvs::read_options(std::vector&, std::vector&)’: bayesxsrc/structadd/FC_hrandom_variance.cpp:221:7: warning: variable ‘f’ set but not used [-Wunused-but-set-variable] 221 | int f; | ^ bayesxsrc/structadd/FC_hrandom_variance.cpp: In member function ‘virtual void MCMC::FC_hrandom_variance_ssvs::update()’: bayesxsrc/structadd/FC_hrandom_variance.cpp:334:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 334 | for (i=0;i&, std::vector&)’: bayesxsrc/structadd/FC_hrandom_variance_vec.cpp:39:7: warning: variable ‘f’ set but not used [-Wunused-but-set-variable] 39 | int f; | ^ `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14` `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14STD` -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bayesxsrc/structadd/FC_hrandom_variance_vec_nmig.cpp -o bayesxsrc/structadd/FC_hrandom_variance_vec_nmig.o bayesxsrc/structadd/FC_hrandom_variance_vec_nmig.cpp: In member function ‘virtual void MCMC::FC_hrandom_variance_vec_nmig::read_options(std::vector&, std::vector&)’: bayesxsrc/structadd/FC_hrandom_variance_vec_nmig.cpp:38:7: warning: variable ‘f’ set but not used [-Wunused-but-set-variable] 38 | int f; | ^ `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14` `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14STD` -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bayesxsrc/structadd/FC_linear.cpp -o bayesxsrc/structadd/FC_linear.o bayesxsrc/structadd/FC_linear.cpp: In member function ‘void MCMC::FC_linear::update_IWLS()’: bayesxsrc/structadd/FC_linear.cpp:219:12: warning: variable ‘h’ set but not used [-Wunused-but-set-variable] 219 | double h = 0.0; | ^ bayesxsrc/structadd/FC_linear.cpp: In member function ‘virtual void MCMC::FC_linear::update()’: bayesxsrc/structadd/FC_linear.cpp:374:16: warning: variable ‘logold’ set but not used [-Wunused-but-set-variable] 374 | double logold = 0.0; | ^~~~~~ bayesxsrc/structadd/FC_linear.cpp: In member function ‘void MCMC::FC_linear::create_matrices()’: bayesxsrc/structadd/FC_linear.cpp:615:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 615 | for (i=0;i::solveroot(const statmatrix&, statmatrix&, statmatrix&) [with T = double]’: bayesxsrc/structadd/FC_linear.cpp:226:22: required from here bayesxsrc/bib/statmat.cpp:122:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 122 | for (i=0;irows();i++,hrp++,bp++) | ~^~~~~~~~~~~~~ bayesxsrc/bib/statmat.cpp: In instantiation of ‘void statmatrix::solveroot_t(const statmatrix&, statmatrix&) [with T = double]’: bayesxsrc/structadd/FC_linear.cpp:236:24: required from here bayesxsrc/bib/statmat.cpp:100:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 100 | if (i < this->rows()-1) | ~~^~~~~~~~~~~~~~~~ bayesxsrc/bib/statmat.cpp:103:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 103 | for (j=i+1;jrows();j++,xp++) | ~^~~~~~~~~~~~~ `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14` `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14STD` -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bayesxsrc/structadd/FC_mult.cpp -o bayesxsrc/structadd/FC_mult.o bayesxsrc/structadd/FC_mult.cpp: In member function ‘virtual bool MCMC::FC_mult::posteriormode()’: bayesxsrc/structadd/FC_mult.cpp:257:12: warning: variable ‘h’ set but not used [-Wunused-but-set-variable] 257 | bool h = FCmulteffect.posteriormode(); | ^ bayesxsrc/structadd/FC_mult.cpp:300:12: warning: variable ‘h’ set but not used [-Wunused-but-set-variable] 300 | bool h = FCmulteffect.posteriormode(); | ^ `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14` `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14STD` -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bayesxsrc/structadd/FC_shared.cpp -o bayesxsrc/structadd/FC_shared.o `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14` `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14STD` -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bayesxsrc/structadd/FC_nonp.cpp -o bayesxsrc/structadd/FC_nonp.o bayesxsrc/structadd/FC_nonp.cpp: In member function ‘virtual void MCMC::FC_nonp::read_options(std::vector&, std::vector&)’: bayesxsrc/structadd/FC_nonp.cpp:78:7: warning: variable ‘f’ set but not used [-Wunused-but-set-variable] 78 | int f; | ^ bayesxsrc/structadd/FC_nonp.cpp: In member function ‘void MCMC::FC_nonp::get_linparam()’: bayesxsrc/structadd/FC_nonp.cpp:322:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 322 | for (i=0;i::decomp() [with T = double]’: bayesxsrc/bib/envmatrix.cpp:2099:5: required from ‘void envmatrix::solveU(datamatrix&, const datamatrix&) [with T = double; datamatrix = statmatrix]’ bayesxsrc/structadd/FC_nonp.cpp:401:30: required from here bayesxsrc/bib/envmatrix.cpp:568:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 568 | k::operator()(unsigned int, unsigned int) [with T = int]’, inlined from ‘T statmatrix::quantile(const T&, const unsigned int&) const [with T = double]’ at bayesxsrc/bib/statmat.cpp:1158:28: bayesxsrc/bib/tarray2d.h:218:24: warning: ‘index.statmatrix::.Matrix::.PreMatrix::.Array2D::m_row’ may be used uninitialized [-Wmaybe-uninitialized] 218 | return m_row[ i ][ j ]; | ^~~~~ In file included from bayesxsrc/bib/statmat.h:495: bayesxsrc/bib/statmat.cpp: In function ‘T statmatrix::quantile(const T&, const unsigned int&) const [with T = double]’: bayesxsrc/bib/statmat.cpp:1153:19: note: ‘index’ declared here 1153 | statmatrix index(this->rows(),1); | ^~~~~ `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14` `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14STD` -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bayesxsrc/structadd/FC_nonp_variance.cpp -o bayesxsrc/structadd/FC_nonp_variance.o bayesxsrc/structadd/FC_nonp_variance.cpp: In member function ‘virtual void MCMC::FC_nonp_variance::read_options(std::vector&, std::vector&)’: bayesxsrc/structadd/FC_nonp_variance.cpp:47:7: warning: variable ‘f’ set but not used [-Wunused-but-set-variable] 47 | int f; | ^ bayesxsrc/structadd/FC_nonp_variance.cpp: In member function ‘virtual void MCMC::FC_nonp_variance_varselection::read_options(std::vector&, std::vector&)’: bayesxsrc/structadd/FC_nonp_variance.cpp:722:7: warning: variable ‘f’ set but not used [-Wunused-but-set-variable] 722 | int f; | ^ bayesxsrc/structadd/FC_nonp_variance.cpp: In member function ‘virtual void MCMC::FC_tensor_omega::update()’: bayesxsrc/structadd/FC_nonp_variance.cpp:1579:9: warning: ‘maxlogprob’ may be used uninitialized [-Wmaybe-uninitialized] 1579 | if(logprobs(i,0) > maxlogprob) | ^~ bayesxsrc/structadd/FC_nonp_variance.cpp:1562:12: note: ‘maxlogprob’ was declared here 1562 | double maxlogprob; | ^~~~~~~~~~ `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14` `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14STD` -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bayesxsrc/structadd/FC_nonp_variance_vec.cpp -o bayesxsrc/structadd/FC_nonp_variance_vec.o `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14` `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14STD` -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bayesxsrc/structadd/FC_predict.cpp -o bayesxsrc/structadd/FC_predict.o bayesxsrc/structadd/FC_predict.cpp: In member function ‘virtual void MCMC::FC_predict::outresults(std::ofstream&, std::ofstream&, std::ofstream&, const ST::string&)’: bayesxsrc/structadd/FC_predict.cpp:644:12: warning: variable ‘scalehelp’ set but not used [-Wunused-but-set-variable] 644 | double scalehelp = 0.0; | ^~~~~~~~~ `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14` `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14STD` -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bayesxsrc/structadd/FC_predict_mult.cpp -o bayesxsrc/structadd/FC_predict_mult.o bayesxsrc/structadd/FC_predict_mult.cpp: In member function ‘void MCMC::FC_predict_mult::outresults_DIC(std::ofstream&, std::ofstream&, std::ofstream&, const ST::string&)’: bayesxsrc/structadd/FC_predict_mult.cpp:296:15: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 296 | for (j=0;j responsep; | ^~~~~~ bayesxsrc/structadd/FC_predict_mult.cpp:771:11: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 771 | if (likep[j]->outpredictor) | ^~ bayesxsrc/structadd/FC_predict_mult.cpp:773:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 773 | workmeanmat[j] = workmean; | ^~~~~~~~~~~ `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14` `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14STD` -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bayesxsrc/structadd/FC_cv.cpp -o bayesxsrc/structadd/FC_cv.o `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14` `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14STD` -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bayesxsrc/structadd/FC_variance_pen_vector.cpp -o bayesxsrc/structadd/FC_variance_pen_vector.o bayesxsrc/structadd/FC_variance_pen_vector.cpp: In member function ‘void MCMC::FC_variance_pen_vector::add_variable(datamatrix&, std::vector&, std::vector&)’: bayesxsrc/structadd/FC_variance_pen_vector.cpp:42:7: warning: variable ‘f’ set but not used [-Wunused-but-set-variable] 42 | int f; | ^ bayesxsrc/structadd/FC_variance_pen_vector.cpp: In member function ‘void MCMC::FC_variance_pen_vector_ssvs::add_variable(datamatrix&, std::vector&, std::vector&)’: bayesxsrc/structadd/FC_variance_pen_vector.cpp:658:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 658 | for(int i=0;i, int>::value_type’ {aka ‘int’} [-Wsign-compare] 1715 | for (j=posbeg[i];j<=posend[i];j++) In file included from bayesxsrc/bib/envmatrix.h:484, from bayesxsrc/bib/envmatrix_penalty.h:27, from bayesxsrc/structadd/design.h:31, from bayesxsrc/structadd/design.cpp:22: bayesxsrc/bib/envmatrix.cpp: In instantiation of ‘void envmatrix::decomp() [with T = double]’: bayesxsrc/structadd/design.cpp:36:13: required from here bayesxsrc/bib/envmatrix.cpp:568:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 568 | k::getL(const unsigned int&, const unsigned int&) const [with T = double]’: bayesxsrc/bib/envmatrix.cpp:2517:20: required from ‘statmatrix envmatrix::getL() const [with T = double]’ bayesxsrc/structadd/design.cpp:37:26: required from here bayesxsrc/bib/envmatrix.cpp:2504:8: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2504 | if(jh::get(const unsigned int&, const unsigned int&) const [with T = double]’: bayesxsrc/bib/envmatrix.cpp:2530:19: required from ‘statmatrix envmatrix::get() const [with T = double]’ bayesxsrc/structadd/design.cpp:39:24: required from here bayesxsrc/bib/envmatrix.cpp:307:8: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 307 | if(jh >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 192 | for (j=0;j&, std::vector&)’: bayesxsrc/structadd/design_pspline.cpp:66:7: warning: variable ‘f’ set but not used [-Wunused-but-set-variable] 66 | int f; | ^ In file included from bayesxsrc/bib/envmatrix.h:484, from bayesxsrc/bib/envmatrix_penalty.h:27, from bayesxsrc/structadd/design.h:31, from bayesxsrc/structadd/design_pspline.h:28, from bayesxsrc/structadd/design_pspline.cpp:22: bayesxsrc/bib/envmatrix.cpp: In instantiation of ‘void envmatrix::inverse_envelope(envmatrix&) [with T = double]’: bayesxsrc/structadd/design_pspline.cpp:687:31: required from here bayesxsrc/bib/envmatrix.cpp:2384:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2384 | if(dim-i+k::getL(const unsigned int&, const unsigned int&) const [with T = double]’: bayesxsrc/bib/envmatrix.cpp:2369:38: required from ‘void envmatrix::inverse_envelope(envmatrix&) [with T = double]’ bayesxsrc/structadd/design_pspline.cpp:687:31: required from here bayesxsrc/bib/envmatrix.cpp:2504:8: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2504 | if(jh 0) | ^~ bayesxsrc/structadd/distr.cpp:415:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 415 | optionsp->out(" Number of observations with positive weights: " + | ^~~~~~~~ bayesxsrc/structadd/distr.cpp: In member function ‘virtual bool MCMC::DISTR::posteriormode()’: bayesxsrc/structadd/distr.cpp:827:10: warning: variable ‘h’ set but not used [-Wunused-but-set-variable] 827 | double h = 0.0; | ^ In file included from bayesxsrc/bib/tpremat.h:31, from bayesxsrc/bib/tmatrix.h:34, from bayesxsrc/bib/statmat.h:26, from bayesxsrc/structadd/distr.h:26, from bayesxsrc/structadd/distr.cpp:22: In member function ‘T& Array2D::operator()(unsigned int, unsigned int) [with T = int]’, inlined from ‘T statmatrix::quantile(const T&, const unsigned int&) const [with T = double]’ at bayesxsrc/bib/statmat.cpp:1158:28: bayesxsrc/bib/tarray2d.h:218:24: warning: ‘index.statmatrix::.Matrix::.PreMatrix::.Array2D::m_row’ may be used uninitialized [-Wmaybe-uninitialized] 218 | return m_row[ i ][ j ]; | ^~~~~ In file included from bayesxsrc/bib/statmat.h:495: bayesxsrc/bib/statmat.cpp: In function ‘T statmatrix::quantile(const T&, const unsigned int&) const [with T = double]’: bayesxsrc/bib/statmat.cpp:1153:19: note: ‘index’ declared here 1153 | statmatrix index(this->rows(),1); | ^~~~~ `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14` `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14STD` -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bayesxsrc/structadd/distr_categorical.cpp -o bayesxsrc/structadd/distr_categorical.o `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14` `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14STD` -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bayesxsrc/structadd/distr_categorical_mult.cpp -o bayesxsrc/structadd/distr_categorical_mult.o `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14` `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14STD` -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bayesxsrc/structadd/distr_mixture.cpp -o bayesxsrc/structadd/distr_mixture.o bayesxsrc/structadd/distr_mixture.cpp: In member function ‘virtual void MCMC::DISTR_gaussianmixture::update()’: bayesxsrc/structadd/distr_mixture.cpp:219:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 219 | for (j=0;j, std::vector, std::vector, double*, std::vector*>)’: bayesxsrc/structadd/distr_gamlss_nadja.cpp:16367:15: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 16367 | for(i=0;i, std::vector, double*)’: bayesxsrc/structadd/distr_gamlss_nadja.cpp:16489:15: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 16489 | for(i=0;i, std::vector, std::vector, double*, std::vector*>)’: bayesxsrc/structadd/distr_gamlss_nadja.cpp:24880:12: warning: variable ‘expminuslambda’ set but not used [-Wunused-but-set-variable] 24880 | double expminuslambda; | ^~~~~~~~~~~~~~ bayesxsrc/structadd/distr_gamlss_nadja.cpp: In member function ‘virtual void MCMC::DISTR_gaussiancopula_binary_dagum_latent::compute_iwls_wweightschange_weightsone(double*, double*, double*, double*, double&, const bool&)’: bayesxsrc/structadd/distr_gamlss_nadja.cpp:26984:10: warning: variable ‘u’ set but not used [-Wunused-but-set-variable] 26984 | double u; | ^ `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14` `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14STD` -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bayesxsrc/structadd/distr_gamlss_copula.cpp -o bayesxsrc/structadd/distr_gamlss_copula.o `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14` `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14STD` -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bayesxsrc/structadd/distr_zeroadjusted.cpp -o bayesxsrc/structadd/distr_zeroadjusted.o `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14` `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14STD` -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bayesxsrc/structadd/mcmcsim.cpp -o bayesxsrc/structadd/mcmcsim.o bayesxsrc/structadd/mcmcsim.cpp: In member function ‘bool MCMC::MCMCsim::simulate(ST::string&, const int&, const bool&, const bool&)’: bayesxsrc/structadd/mcmcsim.cpp:214:10: warning: variable ‘c’ set but not used [-Wunused-but-set-variable] 214 | bool c = false; | ^ `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14` `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14STD` -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bayesxsrc/structadd/model_parameters.cpp -o bayesxsrc/structadd/model_parameters.o `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14` `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14STD` -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bayesxsrc/structadd/superbayesreg.cpp -o bayesxsrc/structadd/superbayesreg.o bayesxsrc/structadd/superbayesreg.cpp: In member function ‘virtual int superbayesreg::parse(const ST::string&)’: bayesxsrc/structadd/superbayesreg.cpp:1639:7: warning: variable ‘u’ set but not used [-Wunused-but-set-variable] 1639 | int u = 0; | ^ bayesxsrc/structadd/superbayesreg.cpp: In member function ‘bool superbayesreg::create_distribution()’: bayesxsrc/structadd/superbayesreg.cpp:2483:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2483 | for(i=0;i::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 3814 | if (distr_dirichlets.size() == nrc) | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ bayesxsrc/structadd/superbayesreg.cpp:5702:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5702 | for(coi=0;coi::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5734 | for(coi=0;coi::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5771 | for(coi=0;coi::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5800 | for(coi=0;coi::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5828 | for(coi=0;coi::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5856 | for(coi=0;coi::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5892 | for(coi=0;coi::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5935 | for(coi=0;coi::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5945 | for(lengi=0;lengi::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5949 | for(lengi=0;lengi::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5984 | for(coi=0;coi::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6014 | for(coi=0;coi::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6044 | for(coi=0;coi::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6072 | for(coi=0;coi::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6100 | for(coi=0;coi::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6130 | for(coi=0;coi::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6162 | for(coi=0;coi::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6204 | for(coi=0;coi::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6242 | for(coi=0;coi::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6272 | for(coi=0;coi::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6302 | for(coi=0;coi::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6331 | for(coi=0;coi::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6360 | for(coi=0;coi::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6388 | for(coi=0;coi::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6418 | for(coi=0;coi::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6450 | for(coi=0;coi::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6492 | for(coi=0;coi::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6527 | for(coi=0;coi::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6555 | for(coi=0;coi::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6583 | for(coi=0;coi::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6611 | for(coi=0;coi::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6639 | for(coi=0;coi::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6667 | for(coi=0;coi::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6697 | for(coi=0;coi::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6738 | for(coi=0;coi::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 9424 | for(j=0; j&, std::vector&)’: bayesxsrc/structadd/design_kriging.cpp:90:7: warning: variable ‘f’ set but not used [-Wunused-but-set-variable] 90 | int f; | ^ bayesxsrc/structadd/design_kriging.cpp: In member function ‘void MCMC::DESIGN_kriging::compute_knots(const std::vector >&, const std::vector >&, unsigned int, double, double, std::vector >&, std::vector >&)’: bayesxsrc/structadd/design_kriging.cpp:482:41: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 482 | while(covcritnew&, std::vector&)’: bayesxsrc/structadd/design_userdefined.cpp:83:7: warning: variable ‘f’ set but not used [-Wunused-but-set-variable] 83 | int f; | ^ bayesxsrc/structadd/design_userdefined.cpp: In member function ‘virtual void MCMC::DESIGN_userdefined_tensor::read_options(std::vector&, std::vector&)’: bayesxsrc/structadd/design_userdefined.cpp:734:7: warning: variable ‘f’ set but not used [-Wunused-but-set-variable] 734 | int f; | ^ `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14` `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14STD` -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bayesxsrc/structadd/FC_predictive_check.cpp -o bayesxsrc/structadd/FC_predictive_check.o `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14` `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14STD` -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bayesxsrc/structadd/FC_predict_predictor.cpp -o bayesxsrc/structadd/FC_predict_predictor.o `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14` `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14STD` -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bayesxsrc/structadd/FC_merror.cpp -o bayesxsrc/structadd/FC_merror.o bayesxsrc/structadd/FC_merror.cpp: In member function ‘virtual void MCMC::FC_merror::read_options(std::vector&, std::vector&)’: bayesxsrc/structadd/FC_merror.cpp:40:7: warning: variable ‘f’ set but not used [-Wunused-but-set-variable] 40 | int f; | ^ bayesxsrc/structadd/FC_merror.cpp: In constructor ‘MCMC::FC_merror::FC_merror(MCMC::GENERAL_OPTIONS*, const ST::string&, const ST::string&, std::vector&, std::vector&, datamatrix&, datamatrix&, datamatrix&, MCMC::FC_nonp*)’: bayesxsrc/structadd/FC_merror.cpp:195:39: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits, int>::value_type’ {aka ‘int’} [-Wsign-compare] 195 | for (k=FCp->designp->posbeg[j];k<=FCp->designp->posend[j];k++,workindex++) `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14` `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14STD` -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bayesxsrc/main.cpp -o bayesxsrc/main.o bayesxsrc/main.cpp: In function ‘int main(int, char**)’: bayesxsrc/main.cpp:35:9: warning: variable ‘ptr’ set but not used [-Wunused-but-set-variable] 35 | char *ptr; | ^~~ `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14` `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14STD` -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bayesxsrc/samson/multgaussian.cpp -o bayesxsrc/samson/multgaussian.o `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14` `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14STD` -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bayesxsrc/adaptiv/fullcond_adaptiv.cpp -o bayesxsrc/adaptiv/fullcond_adaptiv.o `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14` `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14STD` -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bayesxsrc/alex/mixture.cpp -o bayesxsrc/alex/mixture.o `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14` `"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R" CMD config CXX14STD` -g -O2 -Wall -pedantic -mtune=native bayesxsrc/andrea/baseline.o bayesxsrc/andrea/cox.o bayesxsrc/andrea/IWLS_baseline.o bayesxsrc/andrea/multibaseline.o bayesxsrc/andrea/multistate.o bayesxsrc/bib/Random.o bayesxsrc/bib/adminparse_gnu.o bayesxsrc/bib/bandmat.o bayesxsrc/bib/bandmat_penalty.o bayesxsrc/bib/bayesreg.o bayesxsrc/bib/bayesreg2.o bayesxsrc/bib/bayesreg3.o bayesxsrc/bib/clstring.o bayesxsrc/bib/command.o bayesxsrc/bib/data.o bayesxsrc/bib/dataobj.o bayesxsrc/bib/envmatrix.o bayesxsrc/bib/envmatrix_penalty.o bayesxsrc/bib/graph.o bayesxsrc/bib/map.o bayesxsrc/bib/mapobject.o bayesxsrc/bib/model.o bayesxsrc/bib/model_remlreg.o bayesxsrc/bib/model_stepwise.o bayesxsrc/bib/option.o bayesxsrc/bib/realobs.o bayesxsrc/bib/realvar.o bayesxsrc/bib/remlreg.o bayesxsrc/bib/sparsemat.o bayesxsrc/bib/statmat.o bayesxsrc/bib/statmat_penalty.o bayesxsrc/bib/statobj.o bayesxsrc/bib/stepwisereg.o bayesxsrc/bib/use.o bayesxsrc/bib/vectorn.o bayesxsrc/dag/adjacency.o bayesxsrc/dag/dagobject.o bayesxsrc/dag/fullcond_dag.o bayesxsrc/dag/fullcond_dag_d.o bayesxsrc/dag/fullcond_dag_ia.o bayesxsrc/dag/fullcond_dag_ia_mixed.o bayesxsrc/dag/fullcond_rj.o bayesxsrc/dag/fullcond_rj_int.o bayesxsrc/dag/fullcond_rj_mix.o bayesxsrc/dag/func_dag.o bayesxsrc/dag/ia.o bayesxsrc/dag/ia_mixed.o bayesxsrc/leyre/nbinomial.o bayesxsrc/leyre/zip.o bayesxsrc/mcmc/baseline_reml.o bayesxsrc/mcmc/distribution.o bayesxsrc/mcmc/fullcond.o bayesxsrc/mcmc/fullcond_merror.o bayesxsrc/mcmc/fullcond_mult.o bayesxsrc/mcmc/fullcond_nonp_gaussian.o bayesxsrc/mcmc/fullcond_nonp_gaussian_stepwise.o bayesxsrc/mcmc/gaussian_heteroskedastic.o bayesxsrc/mcmc/hrandom.o bayesxsrc/mcmc/kriging2.o bayesxsrc/mcmc/kriging.o bayesxsrc/mcmc/mcmc.o bayesxsrc/mcmc/mcmc_const.o bayesxsrc/mcmc/mcmc_const_stepwise.o bayesxsrc/mcmc/mcmc_nonp.o bayesxsrc/mcmc/mcmc_nonpbasis.o bayesxsrc/mcmc/mcmcsimul.o bayesxsrc/mcmc/mcmcsimul2.o bayesxsrc/mcmc/mcmcsimul2_multi.o bayesxsrc/mcmc/randomeffect.o bayesxsrc/mcmc/randomeffect_stepwise.o bayesxsrc/mcmc/remlest.o bayesxsrc/mcmc/remlest_multi.o bayesxsrc/mcmc/remlest_multi2.o bayesxsrc/mcmc/remlest_multi3.o bayesxsrc/mcmc/tvariance.o bayesxsrc/mcmc/tvariance2dim.o bayesxsrc/mcmc/variance_nonp.o bayesxsrc/mcmc/variance_nonp_vector.o bayesxsrc/mcmc/variance_nonp_vector_nigmix.o bayesxsrc/psplines/IWLS_pspline.o bayesxsrc/psplines/bsplinemat.o bayesxsrc/psplines/fullcond_pspline_gaussian.o bayesxsrc/psplines/fullcond_pspline_stepwise.o bayesxsrc/psplines/fullcond_pspline_surf_gaussian.o bayesxsrc/psplines/fullcond_pspline_surf_stepwise.o bayesxsrc/psplines/mcmc_pspline.o bayesxsrc/psplines/mcmc_pspline_surf.o bayesxsrc/psplines/spline_basis.o bayesxsrc/psplines/spline_basis_surf.o bayesxsrc/structadd/FC.o bayesxsrc/structadd/FC_hrandom.o bayesxsrc/structadd/FC_hrandom_variance.o bayesxsrc/structadd/FC_hrandom_variance_vec.o bayesxsrc/structadd/FC_hrandom_variance_vec_nmig.o bayesxsrc/structadd/FC_linear.o bayesxsrc/structadd/FC_mult.o bayesxsrc/structadd/FC_shared.o bayesxsrc/structadd/FC_nonp.o bayesxsrc/structadd/FC_nonp_variance.o bayesxsrc/structadd/FC_nonp_variance_vec.o bayesxsrc/structadd/FC_predict.o bayesxsrc/structadd/FC_predict_mult.o bayesxsrc/structadd/FC_cv.o bayesxsrc/structadd/FC_variance_pen_vector.o bayesxsrc/structadd/GENERAL_OPTIONS.o bayesxsrc/structadd/MASTER_obj.o bayesxsrc/structadd/design.o bayesxsrc/structadd/design_hrandom.o bayesxsrc/structadd/design_mrf.o bayesxsrc/structadd/design_pspline.o bayesxsrc/structadd/distr.o bayesxsrc/structadd/distr_categorical.o bayesxsrc/structadd/distr_categorical_mult.o bayesxsrc/structadd/distr_mixture.o bayesxsrc/structadd/distr_gamlss.o bayesxsrc/structadd/distr_gamlss_nadja.o bayesxsrc/structadd/distr_gamlss_copula.o bayesxsrc/structadd/distr_zeroadjusted.o bayesxsrc/structadd/mcmcsim.o bayesxsrc/structadd/model_parameters.o bayesxsrc/structadd/superbayesreg.o bayesxsrc/structadd/design_kriging.o bayesxsrc/structadd/design_userdefined.o bayesxsrc/structadd/FC_predictive_check.o bayesxsrc/structadd/FC_predict_predictor.o bayesxsrc/structadd/FC_merror.o bayesxsrc/main.o bayesxsrc/samson/multgaussian.o bayesxsrc/adaptiv/fullcond_adaptiv.o bayesxsrc/alex/mixture.o -Wl,-O1 `gsl-config --libs` -o BayesX make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpPmylxh/R.INSTALLb10b83db5a28c/BayesXsrc/src' installing via 'install.libs.R' to /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/00LOCK-BayesXsrc/00new/BayesXsrc ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * creating tarball packaged installation of ‘BayesXsrc’ as ‘BayesXsrc_3.0-5_R_x86_64-pc-linux-gnu.tar.gz’ * DONE (BayesXsrc)