* installing to library ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages’ * installing *source* package ‘Ball’ ... ** package ‘Ball’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-13 (Debian 13.2.0-23) 13.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpY0VJ08/R.INSTALL188dcd5ec0bb53/Ball/src' gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -DR_BUILD -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c BD.c -o BD.o BD.c: In function ‘BD’: BD.c:196: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 196 | #pragma omp parallel | BD.c:201: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 201 | #pragma omp for | BD.c: In function ‘UBD’: BD.c:285: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 285 | #pragma omp parallel | BD.c:290: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 290 | #pragma omp for | BD.c: In function ‘KBD’: BD.c:684: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 684 | #pragma omp parallel | BD.c:689: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 689 | #pragma omp for | BD.c: In function ‘UKBD’: BD.c:941: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 941 | #pragma omp parallel | BD.c:944: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 944 | #pragma omp for | gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -DR_BUILD -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c BI.c -o BI.o BI.c: In function ‘BI’: BI.c:372: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 372 | #pragma omp parallel | BI.c:376: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 376 | #pragma omp for | BI.c:413: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 413 | #pragma omp parallel | BI.c:417: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 417 | #pragma omp for | BI.c: In function ‘UBI’: BI.c:542: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 542 | #pragma omp parallel | BI.c:547: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 547 | #pragma omp for | gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -DR_BUILD -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ball_init.c -o ball_init.o gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -DR_BUILD -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c bcor.c -o bcor.o bcor.c: In function ‘_bcor_test’: bcor.c:449: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 449 | #pragma omp parallel | bcor.c:456: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 456 | #pragma omp for | bcor.c: In function ‘_u_bcor_test’: bcor.c:536: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 536 | #pragma omp parallel | bcor.c:545: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 545 | #pragma omp for | bcor.c: In function ‘_bcor_k_sample’: bcor.c:822: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 822 | #pragma omp parallel | bcor.c:825: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 825 | #pragma omp for | gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -DR_BUILD -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c bd_gwas.c -o bd_gwas.o bd_gwas.c: In function ‘bd_gwas’: bd_gwas.c:216: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 216 | #pragma omp parallel | bd_gwas.c:220: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 220 | #pragma omp for | bd_gwas.c:246:5: warning: ‘batch_num’ may be used uninitialized [-Wmaybe-uninitialized] 246 | free_int_matrix(randn_mat, batch_num, n - 1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ bd_gwas.c:203:9: note: ‘batch_num’ was declared here 203 | int batch_num, fix_batch_num; | ^~~~~~~~~ gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -DR_BUILD -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c bdd_matrix.c -o bdd_matrix.o bdd_matrix.c: In function ‘bdd_matrix_bias_two_group’: bdd_matrix.c:95: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 95 | #pragma omp parallel | bdd_matrix.c:98: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 98 | #pragma omp for | bdd_matrix.c: In function ‘bdd_matrix_bias’: bdd_matrix.c:162: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 162 | #pragma omp parallel | bdd_matrix.c:165: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 165 | #pragma omp for | gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -DR_BUILD -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c kbcov.c -o kbcov.o kbcov.c: In function ‘KBCOV’: kbcov.c:143: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 143 | #pragma omp parallel | kbcov.c:147: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 147 | #pragma omp for | gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -DR_BUILD -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c kbd.c -o kbd.o kbd.c: In function ‘KBD3’: kbd.c:493: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 493 | #pragma omp parallel | kbd.c:500: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 500 | #pragma omp for | kbd.c: In function ‘bd_gwas_screening’: kbd.c:674: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 674 | #pragma omp parallel | kbd.c:678: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 678 | #pragma omp for | kbd.c:769: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 769 | #pragma omp parallel | kbd.c:775: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 775 | #pragma omp for | kbd.c: In function ‘bd_gwas_refining_single’: kbd.c:957: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 957 | #pragma omp parallel | kbd.c:963: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 963 | #pragma omp for | kbd.c: In function ‘bd_gwas_refining’: kbd.c:1121: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 1121 | #pragma omp parallel | kbd.c:1127: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 1127 | #pragma omp for | gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -DR_BUILD -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c surv.c -o surv.o gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -DR_BUILD -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c utilities.c -o utilities.o gcc-13 -shared -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -Wl,-O1 -o Ball.so BD.o BI.o ball_init.o bcor.o bd_gwas.o bdd_matrix.o kbcov.o kbd.o surv.o utilities.o -fopenmp -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpY0VJ08/R.INSTALL188dcd5ec0bb53/Ball/src' make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpY0VJ08/R.INSTALL188dcd5ec0bb53/Ball/src' make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpY0VJ08/R.INSTALL188dcd5ec0bb53/Ball/src' installing to /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/00LOCK-Ball/00new/Ball/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * creating tarball packaged installation of ‘Ball’ as ‘Ball_1.3.13_R_x86_64-pc-linux-gnu.tar.gz’ * DONE (Ball)