* installing to library ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages’
* installing *source* package ‘Ball’ ...
** package ‘Ball’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (Debian 13.2.0-23) 13.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpY0VJ08/R.INSTALL188dcd5ec0bb53/Ball/src'
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -DR_BUILD -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c BD.c -o BD.o
BD.c: In function ‘BD’:
BD.c:196: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
196 | #pragma omp parallel
|
BD.c:201: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas]
201 | #pragma omp for
|
BD.c: In function ‘UBD’:
BD.c:285: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
285 | #pragma omp parallel
|
BD.c:290: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas]
290 | #pragma omp for
|
BD.c: In function ‘KBD’:
BD.c:684: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
684 | #pragma omp parallel
|
BD.c:689: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas]
689 | #pragma omp for
|
BD.c: In function ‘UKBD’:
BD.c:941: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
941 | #pragma omp parallel
|
BD.c:944: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas]
944 | #pragma omp for
|
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -DR_BUILD -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c BI.c -o BI.o
BI.c: In function ‘BI’:
BI.c:372: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
372 | #pragma omp parallel
|
BI.c:376: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas]
376 | #pragma omp for
|
BI.c:413: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
413 | #pragma omp parallel
|
BI.c:417: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas]
417 | #pragma omp for
|
BI.c: In function ‘UBI’:
BI.c:542: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
542 | #pragma omp parallel
|
BI.c:547: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas]
547 | #pragma omp for
|
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -DR_BUILD -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ball_init.c -o ball_init.o
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -DR_BUILD -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c bcor.c -o bcor.o
bcor.c: In function ‘_bcor_test’:
bcor.c:449: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
449 | #pragma omp parallel
|
bcor.c:456: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas]
456 | #pragma omp for
|
bcor.c: In function ‘_u_bcor_test’:
bcor.c:536: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
536 | #pragma omp parallel
|
bcor.c:545: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas]
545 | #pragma omp for
|
bcor.c: In function ‘_bcor_k_sample’:
bcor.c:822: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
822 | #pragma omp parallel
|
bcor.c:825: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas]
825 | #pragma omp for
|
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -DR_BUILD -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c bd_gwas.c -o bd_gwas.o
bd_gwas.c: In function ‘bd_gwas’:
bd_gwas.c:216: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
216 | #pragma omp parallel
|
bd_gwas.c:220: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas]
220 | #pragma omp for
|
bd_gwas.c:246:5: warning: ‘batch_num’ may be used uninitialized [-Wmaybe-uninitialized]
246 | free_int_matrix(randn_mat, batch_num, n - 1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bd_gwas.c:203:9: note: ‘batch_num’ was declared here
203 | int batch_num, fix_batch_num;
| ^~~~~~~~~
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -DR_BUILD -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c bdd_matrix.c -o bdd_matrix.o
bdd_matrix.c: In function ‘bdd_matrix_bias_two_group’:
bdd_matrix.c:95: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
95 | #pragma omp parallel
|
bdd_matrix.c:98: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas]
98 | #pragma omp for
|
bdd_matrix.c: In function ‘bdd_matrix_bias’:
bdd_matrix.c:162: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
162 | #pragma omp parallel
|
bdd_matrix.c:165: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas]
165 | #pragma omp for
|
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -DR_BUILD -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c kbcov.c -o kbcov.o
kbcov.c: In function ‘KBCOV’:
kbcov.c:143: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
143 | #pragma omp parallel
|
kbcov.c:147: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas]
147 | #pragma omp for
|
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -DR_BUILD -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c kbd.c -o kbd.o
kbd.c: In function ‘KBD3’:
kbd.c:493: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
493 | #pragma omp parallel
|
kbd.c:500: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas]
500 | #pragma omp for
|
kbd.c: In function ‘bd_gwas_screening’:
kbd.c:674: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
674 | #pragma omp parallel
|
kbd.c:678: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas]
678 | #pragma omp for
|
kbd.c:769: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
769 | #pragma omp parallel
|
kbd.c:775: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas]
775 | #pragma omp for
|
kbd.c: In function ‘bd_gwas_refining_single’:
kbd.c:957: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
957 | #pragma omp parallel
|
kbd.c:963: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas]
963 | #pragma omp for
|
kbd.c: In function ‘bd_gwas_refining’:
kbd.c:1121: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
1121 | #pragma omp parallel
|
kbd.c:1127: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas]
1127 | #pragma omp for
|
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -DR_BUILD -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c surv.c -o surv.o
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -DR_BUILD -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c utilities.c -o utilities.o
gcc-13 -shared -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -Wl,-O1 -o Ball.so BD.o BI.o ball_init.o bcor.o bd_gwas.o bdd_matrix.o kbcov.o kbd.o surv.o utilities.o -fopenmp -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpY0VJ08/R.INSTALL188dcd5ec0bb53/Ball/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpY0VJ08/R.INSTALL188dcd5ec0bb53/Ball/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpY0VJ08/R.INSTALL188dcd5ec0bb53/Ball/src'
installing to /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/00LOCK-Ball/00new/Ball/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* creating tarball
packaged installation of ‘Ball’ as ‘Ball_1.3.13_R_x86_64-pc-linux-gnu.tar.gz’
* DONE (Ball)