* installing to library ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages’ * installing *source* package ‘BRISC’ ... ** package ‘BRISC’ successfully unpacked and MD5 sums checked ** using staged installation checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether g++-13 -std=gnu++17 accepts -g... yes checking how to run the C++ preprocessor... g++-13 -std=gnu++17 -E checking for g++-13 -std=gnu++17 option to support OpenMP... -fopenmp configure: creating ./config.status config.status: creating src/Makevars ** libs using C compiler: ‘gcc-13 (Debian 13.2.0-23) 13.2.0’ using C++ compiler: ‘g++-13 (Debian 13.2.0-23) 13.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp8Skeax/R.INSTALL18bfbd247d70e/BRISC/src' g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c BRISC.cpp -o BRISC.o BRISC.cpp: In function ‘SEXPREC* BRISC_bootstrapcpp(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’: BRISC.cpp:475:18: warning: variable ‘ret’ set but not used [-Wunused-but-set-variable] 475 | int i_0, ret = 0; | ^~~ BRISC.cpp: In function ‘SEXPREC* BRISC_estimatecpp(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’: BRISC.cpp:662:18: warning: variable ‘ret’ set but not used [-Wunused-but-set-variable] 662 | int i_0, ret = 0; | ^~~ BRISC.cpp: In function ‘SEXPREC* BRISC_correlationcpp(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’: BRISC.cpp:914:16: warning: unused variable ‘logDet’ [-Wunused-variable] 914 | double logDet = updateBF(B, F, c, C, D, d, nnIndxLU, CIndx, n, theta, covModel, nThreads, fix_nugget); | ^~~~~~ BRISC.cpp: In function ‘SEXPREC* BRISC_decorrelationcpp(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’: BRISC.cpp:1076:16: warning: unused variable ‘logDet’ [-Wunused-variable] 1076 | double logDet = updateBF(B, F, c, C, D, d, nnIndxLU, CIndx, n, theta, covModel, nThreads, fix_nugget); | ^~~~~~ BRISC.cpp: In function ‘SEXPREC* BRISC_estimateneighborcpp(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’: BRISC.cpp:1238:13: warning: unused variable ‘i’ [-Wunused-variable] 1238 | int i, k, l, nProtect=0; | ^ BRISC.cpp:1238:16: warning: unused variable ‘k’ [-Wunused-variable] 1238 | int i, k, l, nProtect=0; | ^ BRISC.cpp:1238:19: warning: unused variable ‘l’ [-Wunused-variable] 1238 | int i, k, l, nProtect=0; | ^ BRISC.cpp:1248:17: warning: unused variable ‘coords’ [-Wunused-variable] 1248 | double *coords = REAL(coords_r); | ^~~~~~ BRISC.cpp:1323:18: warning: variable ‘ret’ set but not used [-Wunused-but-set-variable] 1323 | int i_0, ret = 0; | ^~~ g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c BRISC_Predict.cpp -o BRISC_Predict.o BRISC_Predict.cpp: In function ‘SEXPREC* BRISC_predictioncpp(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’: BRISC_Predict.cpp:80:9: warning: variable ‘nTheta’ set but not used [-Wunused-but-set-variable] 80 | int nTheta, sigmaSqIndx, tauSqIndx, phiIndx, nuIndx; | ^~~~~~ gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lbfgs.c -o lbfgs.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c util.cpp -o util.o util.cpp: In function ‘void fastNN(int, int, double*, int, double*, int*, int*, double*)’: util.cpp:175:11: warning: unused variable ‘k’ [-Wunused-variable] 175 | int i,j,k; | ^ g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -Wl,-O1 -o BRISC.so BRISC.o BRISC_Predict.o init.o lbfgs.o util.o -llapack -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -fopenmp -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp8Skeax/R.INSTALL18bfbd247d70e/BRISC/src' make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp8Skeax/R.INSTALL18bfbd247d70e/BRISC/src' make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp8Skeax/R.INSTALL18bfbd247d70e/BRISC/src' installing to /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/00LOCK-BRISC/00new/BRISC/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * creating tarball packaged installation of ‘BRISC’ as ‘BRISC_1.0.5_R_x86_64-pc-linux-gnu.tar.gz’ * DONE (BRISC)