* installing to library ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages’
* installing *source* package ‘statgenGWAS’ ...
** package ‘statgenGWAS’ successfully unpacked and MD5 sums checked
** using staged installation
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether clang++-18 -std=gnu++17 accepts -g... yes
checking how to run the C++ preprocessor... clang++-18 -std=gnu++17 -E
checking for macOS... not found as on Linux
checking for OpenMP... missing
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C++ compiler: ‘Debian clang version 18.1.4 (1)’
using C++11
make[1]: Entering directory '/tmp/RtmpGEzs8V/R.INSTALL1802971bc4a1ad/statgenGWAS/src'
clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DARMA_DONT_USE_OPENMP -I../inst/include -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion  -c EMMA.cpp -o EMMA.o
clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DARMA_DONT_USE_OPENMP -I../inst/include -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion  -c RcppExports.cpp -o RcppExports.o
clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DARMA_DONT_USE_OPENMP -I../inst/include -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion  -c codeCharMarkers.cpp -o codeCharMarkers.o
clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DARMA_DONT_USE_OPENMP -I../inst/include -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion  -c fastGLS.cpp -o fastGLS.o
clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DARMA_DONT_USE_OPENMP -I../inst/include -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion  -c getThr.cpp -o getThr.o
clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DARMA_DONT_USE_OPENMP -I../inst/include -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion  -c kinship.cpp -o kinship.o
clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DARMA_DONT_USE_OPENMP -I../inst/include -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion  -c utils.cpp -o utils.o
clang++-18 -std=gnu++11 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o statgenGWAS.so EMMA.o RcppExports.o codeCharMarkers.o fastGLS.o getThr.o kinship.o utils.o -DARMA_DONT_USE_OPENMP -llapack -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lRblas -L/usr/lib/llvm-18/lib -lFortran_main -lFortranRuntime -lFortranDecimal -lm -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpGEzs8V/R.INSTALL1802971bc4a1ad/statgenGWAS/src'
make[1]: Entering directory '/tmp/RtmpGEzs8V/R.INSTALL1802971bc4a1ad/statgenGWAS/src'
make[1]: Leaving directory '/tmp/RtmpGEzs8V/R.INSTALL1802971bc4a1ad/statgenGWAS/src'
installing to /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/00LOCK-statgenGWAS/00new/statgenGWAS/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (statgenGWAS)