* using log directory ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/smoothROCtime.Rcheck’ * using R Under development (unstable) (2024-04-29 r86495) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 18.1.4 (1) Debian flang-new version 18.1.4 (1) * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘smoothROCtime/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘smoothROCtime’ version ‘0.1.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking serialization versions ... OK * checking whether package ‘smoothROCtime’ can be installed ... OK See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-debian-clang/smoothROCtime-00install.html' for details. * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [2s/3s] OK * checking whether the package can be loaded with stated dependencies ... [2s/2s] OK * checking whether the package can be unloaded cleanly ... [2s/2s] OK * checking whether the namespace can be loaded with stated dependencies ... [2s/3s] OK * checking whether the namespace can be unloaded cleanly ... [2s/3s] OK * checking loading without being on the library search path ... [2s/3s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [13s/17s] OK * checking Rd files ... [1s/1s] NOTE checkRd: (-1) funcen.Rd:14: Lost braces; missing escapes or markup? 14 | \item{bw}{method for computing the bandwidth matrix. Most of the methods included in the \code{\link{kde}} function can be used: Hpi, Hpi.diag, Hlscv, Hlscv.diag, Hbcv, Hbcv.diag, Hscv, Hscv.diag, Hucv and Hucv.diag. Other considered methods are naive.pdf (diag(N^{-1/5}, N^{-1/5})^2) and naive.cdf (diag(N^{-1/3}, N^{-1/3})^2), where N is the sample size.} | ^ checkRd: (-1) funcen.Rd:14: Lost braces; missing escapes or markup? 14 | \item{bw}{method for computing the bandwidth matrix. Most of the methods included in the \code{\link{kde}} function can be used: Hpi, Hpi.diag, Hlscv, Hlscv.diag, Hbcv, Hbcv.diag, Hscv, Hscv.diag, Hucv and Hucv.diag. Other considered methods are naive.pdf (diag(N^{-1/5}, N^{-1/5})^2) and naive.cdf (diag(N^{-1/3}, N^{-1/3})^2), where N is the sample size.} | ^ checkRd: (-1) funcen.Rd:14: Lost braces; missing escapes or markup? 14 | \item{bw}{method for computing the bandwidth matrix. Most of the methods included in the \code{\link{kde}} function can be used: Hpi, Hpi.diag, Hlscv, Hlscv.diag, Hbcv, Hbcv.diag, Hscv, Hscv.diag, Hucv and Hucv.diag. Other considered methods are naive.pdf (diag(N^{-1/5}, N^{-1/5})^2) and naive.cdf (diag(N^{-1/3}, N^{-1/3})^2), where N is the sample size.} | ^ checkRd: (-1) funcen.Rd:14: Lost braces; missing escapes or markup? 14 | \item{bw}{method for computing the bandwidth matrix. Most of the methods included in the \code{\link{kde}} function can be used: Hpi, Hpi.diag, Hlscv, Hlscv.diag, Hbcv, Hbcv.diag, Hscv, Hscv.diag, Hucv and Hucv.diag. Other considered methods are naive.pdf (diag(N^{-1/5}, N^{-1/5})^2) and naive.cdf (diag(N^{-1/3}, N^{-1/3})^2), where N is the sample size.} | ^ checkRd: (-1) smoothROCtime-package.Rd:12: Lost braces 12 | \item \code{\link{funcen}}: {Bivariate kernel density estimation of the joint density function of the \eqn{(marker, time-to-event)} variable.} | ^ checkRd: (-1) smoothROCtime-package.Rd:13: Lost braces; missing escapes or markup? 13 | \item \code{\link{stRoc}}: {Smooth estimations for Cumulative/Dynamic and Incident/Dynamic ROC curves.} | ^ checkRd: (-1) smoothROCtime-package.Rd:14: Lost braces; missing escapes or markup? 14 | \item \code{\link{plot.sROCt}}: {Plots of Cumulative/Dynamic and Incident/Dyanmic ROC curve estimations.} | ^ checkRd: (-1) stRoc.Rd:17: Lost braces; missing escapes or markup? 17 | \item{bw}{procedure for computing the bandwidth matrix. Most of the methods included at the \code{kde} function can be used: Hpi, Hpi.diag, Hlscv, Hlscv.diag, Hbcv, Hbcv.diag, Hscv, Hscv.diag, Hucv and Hucv.diag. Other considered methods are naive.pdf (diag(N^{-1/5}, N^{-1/5})^2) and naive.cdf (diag(N^{-1/3}, N^{-1/3})^2), where N is the sample size.} | ^ checkRd: (-1) stRoc.Rd:17: Lost braces; missing escapes or markup? 17 | \item{bw}{procedure for computing the bandwidth matrix. Most of the methods included at the \code{kde} function can be used: Hpi, Hpi.diag, Hlscv, Hlscv.diag, Hbcv, Hbcv.diag, Hscv, Hscv.diag, Hucv and Hucv.diag. Other considered methods are naive.pdf (diag(N^{-1/5}, N^{-1/5})^2) and naive.cdf (diag(N^{-1/3}, N^{-1/3})^2), where N is the sample size.} | ^ checkRd: (-1) stRoc.Rd:17: Lost braces; missing escapes or markup? 17 | \item{bw}{procedure for computing the bandwidth matrix. Most of the methods included at the \code{kde} function can be used: Hpi, Hpi.diag, Hlscv, Hlscv.diag, Hbcv, Hbcv.diag, Hscv, Hscv.diag, Hucv and Hucv.diag. Other considered methods are naive.pdf (diag(N^{-1/5}, N^{-1/5})^2) and naive.cdf (diag(N^{-1/3}, N^{-1/3})^2), where N is the sample size.} | ^ checkRd: (-1) stRoc.Rd:17: Lost braces; missing escapes or markup? 17 | \item{bw}{procedure for computing the bandwidth matrix. Most of the methods included at the \code{kde} function can be used: Hpi, Hpi.diag, Hlscv, Hlscv.diag, Hbcv, Hbcv.diag, Hscv, Hscv.diag, Hucv and Hucv.diag. Other considered methods are naive.pdf (diag(N^{-1/5}, N^{-1/5})^2) and naive.cdf (diag(N^{-1/3}, N^{-1/3})^2), where N is the sample size.} | ^ checkRd: (-1) stRoc.Rd:69: Lost braces; missing escapes or markup? 69 | \item {\code{time}} - {single point of time at which the estimation each the C/D ROC curve has been computed.} | ^ checkRd: (-1) stRoc.Rd:70: Lost braces; missing escapes or markup? 70 | \item {\code{obvt}} - {observed times for the individuals in the sample.} | ^ checkRd: (-1) stRoc.Rd:71: Lost braces; missing escapes or markup? 71 | \item {\code{p}} - {estimations of the probabilities computed and allocated to each subject.} | ^ * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking LazyData ... NOTE 'LazyData' is specified without a 'data' directory * checking examples ... [17s/19s] OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed stRoc 7.401 0.121 8.339 funcen 6.847 0.127 7.612 * checking PDF version of manual ... [6s/8s] OK * checking HTML version of manual ... [1s/1s] OK * checking for non-standard things in the check directory ... OK * DONE Status: 2 NOTEs