* using log directory ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/sgapi.Rcheck’ * using R Under development (unstable) (2024-04-27 r86487) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 18.1.4 (1) Debian flang-new version 18.1.4 (1) * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘sgapi/DESCRIPTION’ ... OK * this is package ‘sgapi’ version ‘1.0.2’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘sgapi’ can be installed ... OK See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-debian-clang/sgapi-00install.html' for details. * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [2s/2s] OK * checking whether the package can be loaded with stated dependencies ... [1s/1s] OK * checking whether the package can be unloaded cleanly ... [1s/1s] OK * checking whether the namespace can be loaded with stated dependencies ... [1s/2s] OK * checking whether the namespace can be unloaded cleanly ... [2s/2s] OK * checking loading without being on the library search path ... [2s/2s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [10s/13s] OK * checking Rd files ... [0s/1s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [0s/1s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... [5s/14s] OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... [9s/31s] ERROR Running ‘testthat.R’ [8s/31s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(sgapi) > > test_check("sgapi") Reading layer `OGRGeoJSON' from data source `https://services1.arcgis.com/ESMARspQHYMw9BZ9/arcgis/rest/services/MSOA_Dec_2011_Boundaries_Generalised_Clipped_BGC_EW_V3_2022/FeatureServer/0/query?where=1%3D1&outFields=*&geometry=-1.282825%2C52.354169%2C0.206626%2C52.7106&geometryType=esriGeometryEnvelope&inSR=4326&spatialRel=esriSpatialRelIntersects&outSR=4326&geometryPrecision=3&resultOffset=0&f=geojson' using driver `GeoJSON' Simple feature collection with 191 features and 11 fields Geometry type: MULTIPOLYGON Dimension: XY Bounding box: xmin: -1.46 ymin: 52.231 xmax: 0.368 ymax: 52.887 Geodetic CRS: WGS 84 Reading layer `OGRGeoJSON' from data source `https://services1.arcgis.com/ESMARspQHYMw9BZ9/arcgis/rest/services/MSOA_Dec_2011_Boundaries_Generalised_Clipped_BGC_EW_V3_2022/FeatureServer/0/query?where=1%3D1&outFields=*&geometry=-1.282825%2C52.354169%2C0.206626%2C52.7106&geometryType=esriGeometryEnvelope&inSR=4326&spatialRel=esriSpatialRelIntersects&outSR=4326&geometryPrecision=3&resultOffset=200&f=geojson' using driver `GeoJSON' Simple feature collection with 0 features and 0 fields Bounding box: xmin: NA ymin: NA xmax: NA ymax: NA Geodetic CRS: WGS 84 Reading layer `OGRGeoJSON' from data source `https://services1.arcgis.com/ESMARspQHYMw9BZ9/arcgis/rest/services/Local_Authority_Districts_December_2022_UK_BGC_V2/FeatureServer/0/query?where=%20(LAD22NM%20%3D%20'Derbyshire%20Dales'%20OR%20LAD22NM%20%3D%20'Harrogate'%20OR%20LAD22NM%20%3D%20'West%20Northamptonshire')%20&outFields=*&outSR=4326&f=geojson' using driver `GeoJSON' Simple feature collection with 3 features and 10 fields Geometry type: POLYGON Dimension: XY Bounding box: xmin: -2.004508 ymin: 51.97729 xmax: -0.7050439 ymax: 54.26161 Geodetic CRS: WGS 84 Reading layer `OGRGeoJSON' from data source `https://services1.arcgis.com/ESMARspQHYMw9BZ9/arcgis/rest/services/MSOA_Dec_2011_Boundaries_Generalised_Clipped_BGC_EW_V3_2022/FeatureServer/0/query?where=1%3D1&outFields=*&geometry=52.354169%2C-1.282825%2C52.7106%2C0.206626&geometryType=esriGeometryEnvelope&inSR=4326&spatialRel=esriSpatialRelIntersects&outSR=4326&geometryPrecision=3&resultOffset=0&f=geojson' using driver `GeoJSON' Simple feature collection with 0 features and 0 fields Bounding box: xmin: NA ymin: NA xmax: NA ymax: NA Geodetic CRS: WGS 84 Reading layer `GeoJSONSeq' from data source `https://services1.arcgis.com/ESMARspQHYMw9BZ9/arcgis/rest/services/Local_Authority_Districts_December_2022_UK_BGC_V2/FeatureServer/0/query?where=%20(L22NM%20%3D%20'Derbyshire%20Dales'%20OR%20L22NM%20%3D%20'Harrogate')%20&outFields=*&outSR=4326&f=geojson' using driver `GeoJSONSeq' Re-reading with feature count reset from 1 to 0 Simple feature collection with 0 features and 0 fields Bounding box: xmin: NA ymin: NA xmax: NA ymax: NA Geodetic CRS: WGS 84 No encoding supplied: defaulting to UTF-8. Rows: 720 Columns: 34 -- Column specification -------------------------------------------------------- Delimiter: "," chr (16): DATE, DATE_NAME, DATE_CODE, DATE_TYPE, GEOGRAPHY_NAME, GEOGRAPHY_C... dbl (17): DATE_TYPECODE, DATE_SORTORDER, GEOGRAPHY, GEOGRAPHY_TYPECODE, GEOG... lgl (1): OBS_CONF i Use `spec()` to retrieve the full column specification for this data. i Specify the column types or set `show_col_types = FALSE` to quiet this message. No encoding supplied: defaulting to UTF-8. Rows: 25000 Columns: 58 -- Column specification -------------------------------------------------------- Delimiter: "," chr (23): DATE, DATE_NAME, DATE_CODE, DATE_TYPE, GEOGRAPHY_NAME, GEOGRAPHY_T... dbl (34): DATE_TYPECODE, DATE_SORTORDER, GEOGRAPHY, GEOGRAPHY_CODE, GEOGRAPH... lgl (1): OBS_CONF i Use `spec()` to retrieve the full column specification for this data. i Specify the column types or set `show_col_types = FALSE` to quiet this message. No encoding supplied: defaulting to UTF-8. Rows: 3750 Columns: 40 -- Column specification -------------------------------------------------------- Delimiter: "," chr (18): DATE_TYPE, GEOGRAPHY_NAME, GEOGRAPHY_CODE, GEOGRAPHY_TYPE, C_SEX_N... dbl (21): DATE, DATE_NAME, DATE_CODE, DATE_TYPECODE, DATE_SORTORDER, GEOGRAP... lgl (1): OBS_CONF i Use `spec()` to retrieve the full column specification for this data. i Specify the column types or set `show_col_types = FALSE` to quiet this message. No encoding supplied: defaulting to UTF-8. Rows: 3750 Columns: 3 -- Column specification -------------------------------------------------------- Delimiter: "," chr (2): GEOGRAPHY_NAME, C_AGE_NAME dbl (1): OBS_VALUE i Use `spec()` to retrieve the full column specification for this data. i Specify the column types or set `show_col_types = FALSE` to quiet this message. No encoding supplied: defaulting to UTF-8. Rows: 3750 Columns: 3 -- Column specification -------------------------------------------------------- Delimiter: "," chr (2): GEOGRAPHY_NAME, C_AGE_NAME dbl (1): OBS_VALUE i Use `spec()` to retrieve the full column specification for this data. i Specify the column types or set `show_col_types = FALSE` to quiet this message. [ FAIL 2 | WARN 0 | SKIP 0 | PASS 50 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-get_table.R:34:3'): Valid table ID returns a vector ────────── Expected `get_table_link_lookup(...)` to run without any errors. i Actually got a with text: Failed writing received data to disk/application ── Error ('test-get_table.R:39:3'): Valid table ID returns a list ────────────── Error in `curl::curl_fetch_memory(url, handle = handle)`: Failed writing received data to disk/application Backtrace: ▆ 1. ├─testthat::expect_type(...) at test-get_table.R:39:3 2. │ └─testthat::quasi_label(enquo(object), arg = "object") 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. └─sgapi::get_table_link_lookup(...) 5. └─httr::GET(paste0(api_link_count)) 6. └─httr:::request_perform(req, hu$handle$handle) 7. ├─httr:::request_fetch(req$output, req$url, handle) 8. └─httr:::request_fetch.write_memory(req$output, req$url, handle) 9. └─curl::curl_fetch_memory(url, handle = handle) [ FAIL 2 | WARN 0 | SKIP 0 | PASS 50 ] Error: Test failures Execution halted * checking PDF version of manual ... [6s/8s] OK * checking HTML version of manual ... [1s/1s] OK * checking for non-standard things in the check directory ... OK * DONE Status: 1 ERROR