* installing to library ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages’ * installing *source* package ‘seqest’ ... ** package ‘seqest’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Debian clang version 18.1.4 (1)’ using C++11 make[1]: Entering directory '/tmp/RtmpXxLJZy/R.INSTALLe6d8572913b8c/seqest/src' clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c A_optimal_cat.cpp -o A_optimal_cat.o clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c A_optimal_ord.cpp -o A_optimal_ord.o clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c D_optimal.cpp -o D_optimal.o D_optimal.cpp:54:18: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value] 54 | mu_eta[i] = (abs(eta[i]) > thres)? DBL_EPSILON: exp(eta[i])/pow(1 + exp(eta[i]), 2); | ^ D_optimal.cpp:54:18: note: use function 'std::abs' instead 54 | mu_eta[i] = (abs(eta[i]) > thres)? DBL_EPSILON: exp(eta[i])/pow(1 + exp(eta[i]), 2); | ^~~ | std::abs 1 warning generated. clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c QIC.cpp -o QIC.o QIC.cpp:53:18: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value] 53 | mu_eta[i] = (abs(eta[i]) > thres)? DBL_EPSILON: exp(eta[i])/pow(1 + exp(eta[i]), 2); | ^ QIC.cpp:53:18: note: use function 'std::abs' instead 53 | mu_eta[i] = (abs(eta[i]) > thres)? DBL_EPSILON: exp(eta[i])/pow(1 + exp(eta[i]), 2); | ^~~ | std::abs 1 warning generated. clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c RcppExports.cpp -o RcppExports.o clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c getMH.cpp -o getMH.o getMH.cpp:53:18: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value] 53 | mu_eta[i] = (abs(eta[i]) > thres)? DBL_EPSILON: exp(eta[i])/pow(1 + exp(eta[i]), 2); | ^ getMH.cpp:53:18: note: use function 'std::abs' instead 53 | mu_eta[i] = (abs(eta[i]) > thres)? DBL_EPSILON: exp(eta[i])/pow(1 + exp(eta[i]), 2); | ^~~ | std::abs 1 warning generated. clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c getWH.cpp -o getWH.o clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c getWH_ord.cpp -o getWH_ord.o clang++-18 -std=gnu++11 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o seqest.so A_optimal_cat.o A_optimal_ord.o D_optimal.o QIC.o RcppExports.o getMH.o getWH.o getWH_ord.o -llapack -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lRblas -L/usr/lib/llvm-18/lib -lFortran_main -lFortranRuntime -lFortranDecimal -lm -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR make[1]: Leaving directory '/tmp/RtmpXxLJZy/R.INSTALLe6d8572913b8c/seqest/src' make[1]: Entering directory '/tmp/RtmpXxLJZy/R.INSTALLe6d8572913b8c/seqest/src' make[1]: Leaving directory '/tmp/RtmpXxLJZy/R.INSTALLe6d8572913b8c/seqest/src' installing to /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/00LOCK-seqest/00new/seqest/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * creating tarball packaged installation of ‘seqest’ as ‘seqest_1.0.1_R_x86_64-pc-linux-gnu.tar.gz’ * DONE (seqest)