Install log for 'rxylib'

* installing to library ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages’
* installing *source* package ‘rxylib’ ...
** package ‘rxylib’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘Debian clang version 18.1.4 (1)’
using C++17
make[1]: Entering directory '/tmp/RtmpZiF0zF/R.INSTALL3492cd6b6593e7/rxylib/src'
clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -DBOOST_NO_AUTO_PTR -D_HAS_AUTO_PTR_ETC -fpic  -g -O3 -Wall -pedantic  -c read_data.cpp -o read_data.o
clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -DBOOST_NO_AUTO_PTR -D_HAS_AUTO_PTR_ETC -fpic  -g -O3 -Wall -pedantic  -c get_supportedFormats.cpp -o get_supportedFormats.o
clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -DBOOST_NO_AUTO_PTR -D_HAS_AUTO_PTR_ETC -fpic  -g -O3 -Wall -pedantic  -c get_version.cpp -o get_version.o
clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -DBOOST_NO_AUTO_PTR -D_HAS_AUTO_PTR_ETC -fpic  -g -O3 -Wall -pedantic  -c get_meta_DataSet.cpp -o get_meta_DataSet.o
clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -DBOOST_NO_AUTO_PTR -D_HAS_AUTO_PTR_ETC -fpic  -g -O3 -Wall -pedantic  -c get_block_names.cpp -o get_block_names.o
clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -DBOOST_NO_AUTO_PTR -D_HAS_AUTO_PTR_ETC -fpic  -g -O3 -Wall -pedantic  -c RcppExports.cpp -o RcppExports.o
clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -DBOOST_NO_AUTO_PTR -D_HAS_AUTO_PTR_ETC -fpic  -g -O3 -Wall -pedantic  -c xylib/bruker_raw.cpp -o xylib/bruker_raw.o
clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -DBOOST_NO_AUTO_PTR -D_HAS_AUTO_PTR_ETC -fpic  -g -O3 -Wall -pedantic  -c xylib/bruker_spc.cpp -o xylib/bruker_spc.o
clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -DBOOST_NO_AUTO_PTR -D_HAS_AUTO_PTR_ETC -fpic  -g -O3 -Wall -pedantic  -c xylib/cache.cpp -o xylib/cache.o
clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -DBOOST_NO_AUTO_PTR -D_HAS_AUTO_PTR_ETC -fpic  -g -O3 -Wall -pedantic  -c xylib/canberra_cnf.cpp -o xylib/canberra_cnf.o
clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -DBOOST_NO_AUTO_PTR -D_HAS_AUTO_PTR_ETC -fpic  -g -O3 -Wall -pedantic  -c xylib/canberra_mca.cpp -o xylib/canberra_mca.o
clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -DBOOST_NO_AUTO_PTR -D_HAS_AUTO_PTR_ETC -fpic  -g -O3 -Wall -pedantic  -c xylib/chiplot.cpp -o xylib/chiplot.o
clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -DBOOST_NO_AUTO_PTR -D_HAS_AUTO_PTR_ETC -fpic  -g -O3 -Wall -pedantic  -c xylib/cpi.cpp -o xylib/cpi.o
clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -DBOOST_NO_AUTO_PTR -D_HAS_AUTO_PTR_ETC -fpic  -g -O3 -Wall -pedantic  -c xylib/csv.cpp -o xylib/csv.o
clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -DBOOST_NO_AUTO_PTR -D_HAS_AUTO_PTR_ETC -fpic  -g -O3 -Wall -pedantic  -c xylib/dbws.cpp -o xylib/dbws.o
clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -DBOOST_NO_AUTO_PTR -D_HAS_AUTO_PTR_ETC -fpic  -g -O3 -Wall -pedantic  -c xylib/pdcif.cpp -o xylib/pdcif.o
clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -DBOOST_NO_AUTO_PTR -D_HAS_AUTO_PTR_ETC -fpic  -g -O3 -Wall -pedantic  -c xylib/philips_raw.cpp -o xylib/philips_raw.o
clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -DBOOST_NO_AUTO_PTR -D_HAS_AUTO_PTR_ETC -fpic  -g -O3 -Wall -pedantic  -c xylib/philips_udf.cpp -o xylib/philips_udf.o
clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -DBOOST_NO_AUTO_PTR -D_HAS_AUTO_PTR_ETC -fpic  -g -O3 -Wall -pedantic  -c xylib/riet7.cpp -o xylib/riet7.o
clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -DBOOST_NO_AUTO_PTR -D_HAS_AUTO_PTR_ETC -fpic  -g -O3 -Wall -pedantic  -c xylib/rigaku_dat.cpp -o xylib/rigaku_dat.o
clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -DBOOST_NO_AUTO_PTR -D_HAS_AUTO_PTR_ETC -fpic  -g -O3 -Wall -pedantic  -c xylib/specsxy.cpp -o xylib/specsxy.o
clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -DBOOST_NO_AUTO_PTR -D_HAS_AUTO_PTR_ETC -fpic  -g -O3 -Wall -pedantic  -c xylib/spectra.cpp -o xylib/spectra.o
clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -DBOOST_NO_AUTO_PTR -D_HAS_AUTO_PTR_ETC -fpic  -g -O3 -Wall -pedantic  -c xylib/text.cpp -o xylib/text.o
clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -DBOOST_NO_AUTO_PTR -D_HAS_AUTO_PTR_ETC -fpic  -g -O3 -Wall -pedantic  -c xylib/util.cpp -o xylib/util.o
clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -DBOOST_NO_AUTO_PTR -D_HAS_AUTO_PTR_ETC -fpic  -g -O3 -Wall -pedantic  -c xylib/uxd.cpp -o xylib/uxd.o
clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -DBOOST_NO_AUTO_PTR -D_HAS_AUTO_PTR_ETC -fpic  -g -O3 -Wall -pedantic  -c xylib/vamas.cpp -o xylib/vamas.o
clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -DBOOST_NO_AUTO_PTR -D_HAS_AUTO_PTR_ETC -fpic  -g -O3 -Wall -pedantic  -c xylib/winspec_spe.cpp -o xylib/winspec_spe.o
clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -DBOOST_NO_AUTO_PTR -D_HAS_AUTO_PTR_ETC -fpic  -g -O3 -Wall -pedantic  -c xylib/xfit_xdd.cpp -o xylib/xfit_xdd.o
clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -DBOOST_NO_AUTO_PTR -D_HAS_AUTO_PTR_ETC -fpic  -g -O3 -Wall -pedantic  -c xylib/xrdml.cpp -o xylib/xrdml.o
clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -DBOOST_NO_AUTO_PTR -D_HAS_AUTO_PTR_ETC -fpic  -g -O3 -Wall -pedantic  -c xylib/xsyg.cpp -o xylib/xsyg.o
clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -DBOOST_NO_AUTO_PTR -D_HAS_AUTO_PTR_ETC -fpic  -g -O3 -Wall -pedantic  -c xylib/xylib.cpp -o xylib/xylib.o
clang++-18 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o rxylib.so read_data.o get_supportedFormats.o get_version.o get_meta_DataSet.o get_block_names.o RcppExports.o ./xylib/bruker_raw.o ./xylib/bruker_spc.o ./xylib/cache.o ./xylib/canberra_cnf.o ./xylib/canberra_mca.o ./xylib/chiplot.o ./xylib/cpi.o ./xylib/csv.o ./xylib/dbws.o ./xylib/pdcif.o ./xylib/philips_raw.o ./xylib/philips_udf.o ./xylib/riet7.o ./xylib/rigaku_dat.o ./xylib/specsxy.o ./xylib/spectra.o ./xylib/text.o ./xylib/util.o ./xylib/uxd.o ./xylib/vamas.o ./xylib/winspec_spe.o ./xylib/xfit_xdd.o ./xylib/xrdml.o ./xylib/xsyg.o ./xylib/xylib.o -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpZiF0zF/R.INSTALL3492cd6b6593e7/rxylib/src'
make[1]: Entering directory '/tmp/RtmpZiF0zF/R.INSTALL3492cd6b6593e7/rxylib/src'
make[1]: Leaving directory '/tmp/RtmpZiF0zF/R.INSTALL3492cd6b6593e7/rxylib/src'
installing to /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/00LOCK-rxylib/00new/rxylib/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* creating tarball
packaged installation of ‘rxylib’ as ‘rxylib_0.2.12_R_x86_64-pc-linux-gnu.tar.gz’
* DONE (rxylib)