• using R Under development (unstable) (2026-11-08 r90859)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     Debian clang version 23.1.5 (2)     Debian flang version 23.1.5 (2)
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-11-10 08:01:15 UTC
• checking for file ‘phylin/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘phylin’ version ‘2.0.2’
• checking CRAN incoming feasibility ... [2s/3s] NOTE Maintainer: ‘Pedro Tarroso <ptarroso@cibio.up.pt>’ No Authors@R field in DESCRIPTION. Please add one, modifying   Authors@R: c(person(given = "Pedro",                       family = "Tarroso",                       role = c("aut", "cre"),                       email = "ptarroso@cibio.up.pt"),                person(given = "Guillermo",                       family = "Velo-Anton",                       role = "aut"),                person(given = "Silvia",                       family = "Carvalho",                       role = "aut")) as necessary. Package CITATION file contains call(s) to old-style personList() or as.personList(). Please use c() on person objects instead. Package CITATION file contains call(s) to old-style citEntry(). Please use bibentry() instead.
• checking package namespace information ... OK
• checking package dependencies ... INFO Packages suggested but not available for checking: 'raster', 'gdistance'
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘phylin’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/0s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the package can be unloaded cleanly ... [0s/0s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
• checking loading without being on the library search path ... [0s/0s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [6s/8s] OK
• checking Rd files ... [0s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking data for ASCII and uncompressed saves ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [21s/27s] OK Examples with CPU (user + system) or elapsed time > 5s               user system elapsed intgen.idw 5.416 0.027 7.412 multispecies 5.369 0.037 6.539 idw 5.083 0.062 7.004
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [414s/538s] ERROR Error(s) in re-building vignettes:   ... --- re-building ‘phylin_tutorial.Snw’ using Sweave --- finished re-building ‘phylin_tutorial.Snw’ --- re-building ‘resistance_tutorial.Snw’ using Sweave Error: processing vignette 'resistance_tutorial.Snw' failed with diagnostics:  chunk 7 (label = conductanceraster) Error in library(gdistance) : there is no package called ‘gdistance’ --- failed re-building ‘resistance_tutorial.Snw’ SUMMARY: processing the following file failed:   ‘resistance_tutorial.Snw’ Error: Vignette re-building failed. Execution halted
• checking PDF version of manual ... [5s/7s] OK
• checking HTML version of manual ... [2s/2s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 ERROR, 1 NOTE