* installing to library ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages’
* installing *source* package ‘pegas’ ...
** package ‘pegas’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘Debian clang version 18.1.4 (1)’
make[1]: Entering directory '/tmp/RtmpI1hhoL/R.INSTALL3b631e75a74beb/pegas/src'
clang-18 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c mst.c -o mst.o
clang-18 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c pegas.c -o pegas.o
clang-18 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c readVCFbin.c -o readVCFbin.o
readVCFbin.c:18:13: warning: variable 'retval' set but not used [-Wunused-but-set-variable]
   18 |     int sz, retval;
      |             ^
1 warning generated.
clang-18 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c summary_loci_pegas.c -o summary_loci_pegas.o
clang-18 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o pegas.so mst.o pegas.o readVCFbin.o summary_loci_pegas.o -llapack -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lRblas -L/usr/lib/llvm-18/lib -lFortran_main -lFortranRuntime -lFortranDecimal -lm -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpI1hhoL/R.INSTALL3b631e75a74beb/pegas/src'
make[1]: Entering directory '/tmp/RtmpI1hhoL/R.INSTALL3b631e75a74beb/pegas/src'
make[1]: Leaving directory '/tmp/RtmpI1hhoL/R.INSTALL3b631e75a74beb/pegas/src'
installing to /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/00LOCK-pegas/00new/pegas/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* creating tarball
packaged installation of ‘pegas’ as ‘pegas_1.3_R_x86_64-pc-linux-gnu.tar.gz’
* DONE (pegas)