* using log directory ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/panelPomp.Rcheck’
* using R Under development (unstable) (2024-04-29 r86495)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 18.1.4 (1)
    Debian flang-new version 18.1.4 (1)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘panelPomp/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘panelPomp’ version ‘1.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘panelPomp’ can be installed ... OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-debian-clang/panelPomp-00install.html' for details.
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/2s] OK
* checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the package can be unloaded cleanly ... [1s/2s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s/2s] OK
* checking whether the namespace can be unloaded cleanly ... [1s/2s] OK
* checking loading without being on the library search path ... [1s/2s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [11s/14s] OK
* checking Rd files ... [1s/1s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... [11s/15s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [64s/81s] OK
  Running ‘_options.R’ [1s/1s]
  Comparing ‘_options.Rout’ to ‘_options.Rout.save’ ... OK
  Running ‘aaa.R’ [1s/2s]
  Comparing ‘aaa.Rout’ to ‘aaa.Rout.save’ ... OK
  Running ‘contacts.R’ [21s/24s]
  Comparing ‘contacts.Rout’ to ‘contacts.Rout.save’ ...14c14
< name [,1] [,2] [,3] [,4]
---
> variable [,1] [,2] [,3] [,4]
17c17
< name [,1] [,2] [,3] [,4]
---
> variable [,1] [,2] [,3] [,4]
  Running ‘get_col_row.R’ [1s/1s]
  Comparing ‘get_col_row.Rout’ to ‘get_col_row.Rout.save’ ... OK
  Running ‘mif2.R’ [3s/4s]
  Comparing ‘mif2.Rout’ to ‘mif2.Rout.save’ ... OK
  Running ‘mif2_intern.R’ [3s/3s]
  Comparing ‘mif2_intern.Rout’ to ‘mif2_intern.Rout.save’ ... OK
  Running ‘mif2_methods.R’ [2s/3s]
  Comparing ‘mif2_methods.Rout’ to ‘mif2_methods.Rout.save’ ... OK
  Running ‘panelGompertz.R’ [2s/3s]
  Comparing ‘panelGompertz.Rout’ to ‘panelGompertz.Rout.save’ ...14c14
< name     [,1]      [,2]     [,3]      [,4]     [,5]
---
> variable     [,1]      [,2]     [,3]      [,4]     [,5]
17c17
< name      [,1]     [,2]     [,3]    [,4]     [,5]
---
> variable      [,1]     [,2]     [,3]    [,4]     [,5]
  Running ‘panelGompertzLikelihood.R’ [4s/5s]
  Comparing ‘panelGompertzLikelihood.Rout’ to ‘panelGompertzLikelihood.Rout.save’ ... OK
  Running ‘panelPomp.R’ [3s/4s]
  Comparing ‘panelPomp.Rout’ to ‘panelPomp.Rout.save’ ... OK
  Running ‘panelPomp_methods.R’ [3s/4s]
  Comparing ‘panelPomp_methods.Rout’ to ‘panelPomp_methods.Rout.save’ ... OK
  Running ‘panelRandomWalk.R’ [2s/3s]
  Comparing ‘panelRandomWalk.Rout’ to ‘panelRandomWalk.Rout.save’ ...14c14
< name   [,1]     [,2]     [,3]     [,4]     [,5]
---
> variable   [,1]     [,2]     [,3]     [,4]     [,5]
17c17
< name    [,1]       [,2]      [,3]      [,4]      [,5]
---
> variable    [,1]       [,2]      [,3]      [,4]      [,5]
  Running ‘panel_loglik.R’ [1s/2s]
  Comparing ‘panel_loglik.Rout’ to ‘panel_loglik.Rout.save’ ... OK
  Running ‘params.R’ [2s/3s]
  Comparing ‘params.Rout’ to ‘params.Rout.save’ ... OK
  Running ‘pfilter.R’ [3s/5s]
  Comparing ‘pfilter.Rout’ to ‘pfilter.Rout.save’ ... OK
  Running ‘pfilter_methods.R’ [2s/3s]
  Comparing ‘pfilter_methods.Rout’ to ‘pfilter_methods.Rout.save’ ... OK
  Running ‘plot.R’ [2s/3s]
  Comparing ‘plot.Rout’ to ‘plot.Rout.save’ ... OK
  Running ‘print-results.R’ [2s/3s]
  Comparing ‘print-results.Rout’ to ‘print-results.Rout.save’ ...26c26
< name       [,1]      [,2]      [,3]      [,4]      [,5]      [,6]
---
> variable       [,1]      [,2]      [,3]      [,4]      [,5]      [,6]
31c31
< name     [,1]     [,2]     [,3]     [,4]     [,5]      [,6]
---
> variable     [,1]     [,2]     [,3]     [,4]     [,5]      [,6]
  Running ‘seeded-results.R’ [3s/4s]
  Comparing ‘seeded-results.Rout’ to ‘seeded-results.Rout.save’ ... OK
  Running ‘simulate.R’ [2s/3s]
  Comparing ‘simulate.Rout’ to ‘simulate.Rout.save’ ...11c11
< name     [,1]     [,2]     [,3]     [,4]      [,5]
---
> variable     [,1]     [,2]     [,3]     [,4]      [,5]
* checking PDF version of manual ... [6s/9s] OK
* checking HTML version of manual ... [1s/2s] OK
* checking for non-standard things in the check directory ... OK
* DONE
Status: OK