* installing to library ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages’ * installing *source* package ‘meshed’ ... ** package ‘meshed’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Debian clang version 18.1.4 (1)’ using C++11 make[1]: Entering directory '/tmp/RtmpRK2Bkn/R.INSTALL16b4ec3a3bdd90/meshed/src' clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c RcppExports.cpp -o RcppExports.o clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c covariance_lmc.cpp -o covariance_lmc.o clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c matern.cpp -o matern.o clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c mcmc_hmc_nodes.cpp -o mcmc_hmc_nodes.o clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c mesh_dep.cpp -o mesh_dep.o clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c meshed.cpp -o meshed.o In file included from meshed.cpp:1: In file included from ./meshed.h:14: ./mcmc_hmc_sample.h:597:41: warning: unused variable 't0' [-Wunused-variable] 597 | std::chrono::steady_clock::time_point t0; | ^~ ./mcmc_hmc_sample.h:598:41: warning: unused variable 't1' [-Wunused-variable] 598 | std::chrono::steady_clock::time_point t1; | ^~ 2 warnings generated. clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c meshed_beta_sampler.cpp -o meshed_beta_sampler.o In file included from meshed_beta_sampler.cpp:1: In file included from ./meshed.h:14: ./mcmc_hmc_sample.h:597:41: warning: unused variable 't0' [-Wunused-variable] 597 | std::chrono::steady_clock::time_point t0; | ^~ ./mcmc_hmc_sample.h:598:41: warning: unused variable 't1' [-Wunused-variable] 598 | std::chrono::steady_clock::time_point t1; | ^~ 2 warnings generated. clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c meshed_betalambdatau_sampler.cpp -o meshed_betalambdatau_sampler.o In file included from meshed_betalambdatau_sampler.cpp:1: In file included from ./meshed.h:14: ./mcmc_hmc_sample.h:597:41: warning: unused variable 't0' [-Wunused-variable] 597 | std::chrono::steady_clock::time_point t0; | ^~ ./mcmc_hmc_sample.h:598:41: warning: unused variable 't1' [-Wunused-variable] 598 | std::chrono::steady_clock::time_point t1; | ^~ 2 warnings generated. clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c meshed_casc.cpp -o meshed_casc.o In file included from meshed_casc.cpp:6: In file included from ./meshed.h:14: ./mcmc_hmc_sample.h:597:41: warning: unused variable 't0' [-Wunused-variable] 597 | std::chrono::steady_clock::time_point t0; | ^~ ./mcmc_hmc_sample.h:598:41: warning: unused variable 't1' [-Wunused-variable] 598 | std::chrono::steady_clock::time_point t1; | ^~ meshed_casc.cpp:72:7: warning: unused variable 'd' [-Wunused-variable] 72 | int d = coords.n_cols; | ^ meshed_casc.cpp:92:8: warning: variable 'acceptable' set but not used [-Wunused-but-set-variable] 92 | bool acceptable=true; | ^ 4 warnings generated. clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c meshed_lambda_sampler.cpp -o meshed_lambda_sampler.o In file included from meshed_lambda_sampler.cpp:1: In file included from ./meshed.h:14: ./mcmc_hmc_sample.h:597:41: warning: unused variable 't0' [-Wunused-variable] 597 | std::chrono::steady_clock::time_point t0; | ^~ ./mcmc_hmc_sample.h:598:41: warning: unused variable 't1' [-Wunused-variable] 598 | std::chrono::steady_clock::time_point t1; | ^~ 2 warnings generated. clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c meshed_mcmc.cpp -o meshed_mcmc.o In file included from meshed_mcmc.cpp:6: In file included from ./meshed.h:14: ./mcmc_hmc_sample.h:597:41: warning: unused variable 't0' [-Wunused-variable] 597 | std::chrono::steady_clock::time_point t0; | ^~ ./mcmc_hmc_sample.h:598:41: warning: unused variable 't1' [-Wunused-variable] 598 | std::chrono::steady_clock::time_point t1; | ^~ meshed_mcmc.cpp:172:8: warning: variable 'acceptable' set but not used [-Wunused-but-set-variable] 172 | bool acceptable = false; | ^ 3 warnings generated. clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c meshed_predict.cpp -o meshed_predict.o clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c meshed_prior_sample.cpp -o meshed_prior_sample.o In file included from meshed_prior_sample.cpp:1: In file included from ./meshed.h:14: ./mcmc_hmc_sample.h:597:41: warning: unused variable 't0' [-Wunused-variable] 597 | std::chrono::steady_clock::time_point t0; | ^~ ./mcmc_hmc_sample.h:598:41: warning: unused variable 't1' [-Wunused-variable] 598 | std::chrono::steady_clock::time_point t1; | ^~ 2 warnings generated. clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c meshed_tausq_sampler.cpp -o meshed_tausq_sampler.o In file included from meshed_tausq_sampler.cpp:1: In file included from ./meshed.h:14: ./mcmc_hmc_sample.h:597:41: warning: unused variable 't0' [-Wunused-variable] 597 | std::chrono::steady_clock::time_point t0; | ^~ ./mcmc_hmc_sample.h:598:41: warning: unused variable 't1' [-Wunused-variable] 598 | std::chrono::steady_clock::time_point t1; | ^~ meshed_tausq_sampler.cpp:69:77: warning: '/*' within block comment [-Wcomment] 69 | arma::accu(alter_data.loglik_w_comps) + arma::accu(alter_data.ll_y); //*** | ^ meshed_tausq_sampler.cpp:71:77: warning: '/*' within block comment [-Wcomment] 71 | arma::accu(param_data.loglik_w_comps) + arma::accu(param_data.ll_y); //*** | ^ 4 warnings generated. clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c meshed_theta_sampler.cpp -o meshed_theta_sampler.o In file included from meshed_theta_sampler.cpp:1: In file included from ./meshed.h:14: ./mcmc_hmc_sample.h:597:41: warning: unused variable 't0' [-Wunused-variable] 597 | std::chrono::steady_clock::time_point t0; | ^~ ./mcmc_hmc_sample.h:598:41: warning: unused variable 't1' [-Wunused-variable] 598 | std::chrono::steady_clock::time_point t1; | ^~ 2 warnings generated. clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c meshed_w_prior_sampler.cpp -o meshed_w_prior_sampler.o In file included from meshed_w_prior_sampler.cpp:1: In file included from ./meshed.h:14: ./mcmc_hmc_sample.h:597:41: warning: unused variable 't0' [-Wunused-variable] 597 | std::chrono::steady_clock::time_point t0; | ^~ ./mcmc_hmc_sample.h:598:41: warning: unused variable 't1' [-Wunused-variable] 598 | std::chrono::steady_clock::time_point t1; | ^~ 2 warnings generated. clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c meshed_w_sampler.cpp -o meshed_w_sampler.o In file included from meshed_w_sampler.cpp:1: In file included from ./meshed.h:14: ./mcmc_hmc_sample.h:597:41: warning: unused variable 't0' [-Wunused-variable] 597 | std::chrono::steady_clock::time_point t0; | ^~ ./mcmc_hmc_sample.h:598:41: warning: unused variable 't1' [-Wunused-variable] 598 | std::chrono::steady_clock::time_point t1; | ^~ meshed_w_sampler.cpp:310:14: warning: unused variable 'do_gibbs' [-Wunused-variable] 310 | bool do_gibbs = arma::all(familyid == 0); | ^~~~~~~~ meshed_w_sampler.cpp:215:7: warning: variable 'mala_timer' set but not used [-Wunused-but-set-variable] 215 | int mala_timer = 0; | ^ 4 warnings generated. clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c postprocess.cpp -o postprocess.o clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c utils_caching.cpp -o utils_caching.o clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c utils_check_groups.cpp -o utils_check_groups.o clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c utils_find_nan.cpp -o utils_find_nan.o clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c utils_irls.cpp -o utils_irls.o clang++-18 -std=gnu++11 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o meshed.so RcppExports.o covariance_lmc.o matern.o mcmc_hmc_nodes.o mesh_dep.o meshed.o meshed_beta_sampler.o meshed_betalambdatau_sampler.o meshed_casc.o meshed_lambda_sampler.o meshed_mcmc.o meshed_predict.o meshed_prior_sample.o meshed_tausq_sampler.o meshed_theta_sampler.o meshed_w_prior_sampler.o meshed_w_sampler.o postprocess.o utils_caching.o utils_check_groups.o utils_find_nan.o utils_irls.o -llapack -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lRblas -L/usr/lib/llvm-18/lib -lFortran_main -lFortranRuntime -lFortranDecimal -lm -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR make[1]: Leaving directory '/tmp/RtmpRK2Bkn/R.INSTALL16b4ec3a3bdd90/meshed/src' make[1]: Entering directory '/tmp/RtmpRK2Bkn/R.INSTALL16b4ec3a3bdd90/meshed/src' make[1]: Leaving directory '/tmp/RtmpRK2Bkn/R.INSTALL16b4ec3a3bdd90/meshed/src' installing to /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/00LOCK-meshed/00new/meshed/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (meshed)