* installing to library ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages’ * installing *source* package ‘magi’ ... ** package ‘magi’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Debian clang version 18.1.4 (1)’ make[1]: Entering directory '/tmp/Rtmp3anG1x/R.INSTALLfb80a712eb94f/magi/src' clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/roptim/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -DNDEBUG -I'../inst/include' -fpic -g -O3 -Wall -pedantic -c MagiMain.cpp -o MagiMain.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/roptim/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -DNDEBUG -I'../inst/include' -fpic -g -O3 -Wall -pedantic -c MagiSolver.cpp -o MagiSolver.o In file included from MagiSolver.cpp:3: ./tgtdistr.h:4:9: warning: 'NDEBUG' macro redefined [-Wmacro-redefined] 4 | #define NDEBUG | ^ :3:9: note: previous definition is here 3 | #define NDEBUG 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/roptim/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -DNDEBUG -I'../inst/include' -fpic -g -O3 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/roptim/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -DNDEBUG -I'../inst/include' -fpic -g -O3 -Wall -pedantic -c RcppFullloglikelihood.cpp -o RcppFullloglikelihood.o In file included from RcppFullloglikelihood.cpp:3: ./tgtdistr.h:4:9: warning: 'NDEBUG' macro redefined [-Wmacro-redefined] 4 | #define NDEBUG | ^ :3:9: note: previous definition is here 3 | #define NDEBUG 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/roptim/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -DNDEBUG -I'../inst/include' -fpic -g -O3 -Wall -pedantic -c RcppTestingUtilities.cpp -o RcppTestingUtilities.o In file included from RcppTestingUtilities.cpp:10: In file included from ./RcppWrapper.h:9: ./tgtdistr.h:4:9: warning: 'NDEBUG' macro redefined [-Wmacro-redefined] 4 | #define NDEBUG | ^ :3:9: note: previous definition is here 3 | #define NDEBUG 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/roptim/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -DNDEBUG -I'../inst/include' -fpic -g -O3 -Wall -pedantic -c RcppTranslation.cpp -o RcppTranslation.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/roptim/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -DNDEBUG -I'../inst/include' -fpic -g -O3 -Wall -pedantic -c RcppWrapper.cpp -o RcppWrapper.o In file included from RcppWrapper.cpp:2: In file included from ./RcppWrapper.h:9: ./tgtdistr.h:4:9: warning: 'NDEBUG' macro redefined [-Wmacro-redefined] 4 | #define NDEBUG | ^ :3:9: note: previous definition is here 3 | #define NDEBUG 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/roptim/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -DNDEBUG -I'../inst/include' -fpic -g -O3 -Wall -pedantic -c RcppXthetasigma.cpp -o RcppXthetasigma.o In file included from RcppXthetasigma.cpp:3: ./tgtdistr.h:4:9: warning: 'NDEBUG' macro redefined [-Wmacro-redefined] 4 | #define NDEBUG | ^ :3:9: note: previous definition is here 3 | #define NDEBUG 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/roptim/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -DNDEBUG -I'../inst/include' -fpic -g -O3 -Wall -pedantic -c Rcppgpsmoothing.cpp -o Rcppgpsmoothing.o Rcppgpsmoothing.cpp:1:9: warning: 'NDEBUG' macro redefined [-Wmacro-redefined] 1 | #define NDEBUG | ^ :3:9: note: previous definition is here 3 | #define NDEBUG 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/roptim/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -DNDEBUG -I'../inst/include' -fpic -g -O3 -Wall -pedantic -c RcppsolveMagi.cpp -o RcppsolveMagi.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/roptim/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -DNDEBUG -I'../inst/include' -fpic -g -O3 -Wall -pedantic -c Sampler.cpp -o Sampler.o In file included from Sampler.cpp:1: ./Sampler.h:19:10: warning: private field 'positiveSystem' is not used [-Wunused-private-field] 19 | bool positiveSystem; | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/roptim/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -DNDEBUG -I'../inst/include' -fpic -g -O3 -Wall -pedantic -c band.cpp -o band.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/roptim/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -DNDEBUG -I'../inst/include' -fpic -g -O3 -Wall -pedantic -c classDefinition.cpp -o classDefinition.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/roptim/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -DNDEBUG -I'../inst/include' -fpic -g -O3 -Wall -pedantic -c dynamicalSystemModels.cpp -o dynamicalSystemModels.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/roptim/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -DNDEBUG -I'../inst/include' -fpic -g -O3 -Wall -pedantic -c fullloglikelihood.cpp -o fullloglikelihood.o In file included from fullloglikelihood.cpp:3: ./tgtdistr.h:4:9: warning: 'NDEBUG' macro redefined [-Wmacro-redefined] 4 | #define NDEBUG | ^ :3:9: note: previous definition is here 3 | #define NDEBUG 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/roptim/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -DNDEBUG -I'../inst/include' -fpic -g -O3 -Wall -pedantic -c gpcov.cpp -o gpcov.o In file included from gpcov.cpp:3: ./tgtdistr.h:4:9: warning: 'NDEBUG' macro redefined [-Wmacro-redefined] 4 | #define NDEBUG | ^ :3:9: note: previous definition is here 3 | #define NDEBUG 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/roptim/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -DNDEBUG -I'../inst/include' -fpic -g -O3 -Wall -pedantic -c hmc.cpp -o hmc.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/roptim/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -DNDEBUG -I'../inst/include' -fpic -g -O3 -Wall -pedantic -c testingUtilities.cpp -o testingUtilities.o In file included from testingUtilities.cpp:3: ./tgtdistr.h:4:9: warning: 'NDEBUG' macro redefined [-Wmacro-redefined] 4 | #define NDEBUG | ^ :3:9: note: previous definition is here 3 | #define NDEBUG 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/roptim/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -DNDEBUG -I'../inst/include' -fpic -g -O3 -Wall -pedantic -c tgtdistr.cpp -o tgtdistr.o tgtdistr.cpp:2:9: warning: 'NDEBUG' macro redefined [-Wmacro-redefined] 2 | #define NDEBUG | ^ :3:9: note: previous definition is here 3 | #define NDEBUG 1 | ^ tgtdistr.cpp:514:48: warning: lambda capture 'dotmuAllDimension' is not used [-Wunused-lambda-capture] 514 | fOdeModelShifted.fOdeDx = [&muAllDimension, &dotmuAllDimension, &fOdeModel] | ~~~^~~~~~~~~~~~~~~~~ tgtdistr.cpp:519:52: warning: lambda capture 'dotmuAllDimension' is not used [-Wunused-lambda-capture] 519 | fOdeModelShifted.fOdeDtheta = [&muAllDimension, &dotmuAllDimension, &fOdeModel] | ~~~^~~~~~~~~~~~~~~~~ 3 warnings generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/roptim/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -DNDEBUG -I'../inst/include' -fpic -g -O3 -Wall -pedantic -c xthetasigma.cpp -o xthetasigma.o In file included from xthetasigma.cpp:3: ./tgtdistr.h:4:9: warning: 'NDEBUG' macro redefined [-Wmacro-redefined] 4 | #define NDEBUG | ^ :3:9: note: previous definition is here 3 | #define NDEBUG 1 | ^ xthetasigma.cpp:46:50: warning: lambda capture 'dotmuAllDimension' is not used [-Wunused-lambda-capture] 46 | fOdeModelShifted.fOdeDx = [&muAllDimension, &dotmuAllDimension, &fOdeModel] | ~~~^~~~~~~~~~~~~~~~~ xthetasigma.cpp:51:54: warning: lambda capture 'dotmuAllDimension' is not used [-Wunused-lambda-capture] 51 | fOdeModelShifted.fOdeDtheta = [&muAllDimension, &dotmuAllDimension, &fOdeModel] | ~~~^~~~~~~~~~~~~~~~~ 3 warnings generated. clang++-18 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o magi.so MagiMain.o MagiSolver.o RcppExports.o RcppFullloglikelihood.o RcppTestingUtilities.o RcppTranslation.o RcppWrapper.o RcppXthetasigma.o Rcppgpsmoothing.o RcppsolveMagi.o Sampler.o band.o classDefinition.o dynamicalSystemModels.o fullloglikelihood.o gpcov.o hmc.o testingUtilities.o tgtdistr.o xthetasigma.o -llapack -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lRblas -L/usr/lib/llvm-18/lib -lFortran_main -lFortranRuntime -lFortranDecimal -lm -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR make[1]: Leaving directory '/tmp/Rtmp3anG1x/R.INSTALLfb80a712eb94f/magi/src' make[1]: Entering directory '/tmp/Rtmp3anG1x/R.INSTALLfb80a712eb94f/magi/src' make[1]: Leaving directory '/tmp/Rtmp3anG1x/R.INSTALLfb80a712eb94f/magi/src' installing to /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/00LOCK-magi/00new/magi/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (magi)