* using log directory ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/lcsm.Rcheck’ * using R Under development (unstable) (2024-04-27 r86487) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 18.1.4 (1) Debian flang-new version 18.1.4 (1) * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘lcsm/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘lcsm’ version ‘0.3.2’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘lcsm’ can be installed ... OK See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-debian-clang/lcsm-00install.html' for details. * checking package directory ... OK * checking for future file timestamps ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [1s/1s] OK * checking whether the package can be loaded with stated dependencies ... [1s/1s] OK * checking whether the package can be unloaded cleanly ... [1s/1s] OK * checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK * checking whether the namespace can be unloaded cleanly ... [1s/1s] OK * checking loading without being on the library search path ... [1s/1s] OK * checking whether startup messages can be suppressed ... [1s/1s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [10s/13s] OK * checking Rd files ... [1s/1s] NOTE checkRd: (-1) data_bi_lcsm.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) data_bi_lcsm.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) data_bi_lcsm.Rd:12: Lost braces in \itemize; meant \describe ? checkRd: (-1) data_bi_lcsm.Rd:13: Lost braces in \itemize; meant \describe ? checkRd: (-1) data_bi_lcsm.Rd:14: Lost braces in \itemize; meant \describe ? checkRd: (-1) data_bi_lcsm.Rd:15: Lost braces in \itemize; meant \describe ? checkRd: (-1) data_bi_lcsm.Rd:16: Lost braces in \itemize; meant \describe ? checkRd: (-1) data_bi_lcsm.Rd:17: Lost braces in \itemize; meant \describe ? checkRd: (-1) data_bi_lcsm.Rd:18: Lost braces in \itemize; meant \describe ? checkRd: (-1) data_bi_lcsm.Rd:19: Lost braces in \itemize; meant \describe ? checkRd: (-1) data_bi_lcsm.Rd:20: Lost braces in \itemize; meant \describe ? checkRd: (-1) data_bi_lcsm.Rd:21: Lost braces in \itemize; meant \describe ? checkRd: (-1) data_bi_lcsm.Rd:22: Lost braces in \itemize; meant \describe ? checkRd: (-1) data_bi_lcsm.Rd:23: Lost braces in \itemize; meant \describe ? checkRd: (-1) data_bi_lcsm.Rd:24: Lost braces in \itemize; meant \describe ? checkRd: (-1) data_bi_lcsm.Rd:25: Lost braces in \itemize; meant \describe ? checkRd: (-1) data_bi_lcsm.Rd:26: Lost braces in \itemize; meant \describe ? checkRd: (-1) data_bi_lcsm.Rd:27: Lost braces in \itemize; meant \describe ? checkRd: (-1) data_bi_lcsm.Rd:28: Lost braces in \itemize; meant \describe ? checkRd: (-1) data_bi_lcsm.Rd:29: Lost braces in \itemize; meant \describe ? checkRd: (-1) data_bi_lcsm.Rd:30: Lost braces in \itemize; meant \describe ? checkRd: (-1) data_uni_lcsm.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) data_uni_lcsm.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) data_uni_lcsm.Rd:12: Lost braces in \itemize; meant \describe ? checkRd: (-1) data_uni_lcsm.Rd:13: Lost braces in \itemize; meant \describe ? checkRd: (-1) data_uni_lcsm.Rd:14: Lost braces in \itemize; meant \describe ? checkRd: (-1) data_uni_lcsm.Rd:15: Lost braces in \itemize; meant \describe ? checkRd: (-1) data_uni_lcsm.Rd:16: Lost braces in \itemize; meant \describe ? checkRd: (-1) data_uni_lcsm.Rd:17: Lost braces in \itemize; meant \describe ? checkRd: (-1) data_uni_lcsm.Rd:18: Lost braces in \itemize; meant \describe ? checkRd: (-1) data_uni_lcsm.Rd:19: Lost braces in \itemize; meant \describe ? checkRd: (-1) data_uni_lcsm.Rd:20: Lost braces in \itemize; meant \describe ? checkRd: (-1) fit_bi_lcsm.Rd:31: Lost braces in \itemize; meant \describe ? checkRd: (-1) fit_bi_lcsm.Rd:32: Lost braces in \itemize; meant \describe ? checkRd: (-1) fit_bi_lcsm.Rd:33-34: Lost braces in \itemize; meant \describe ? checkRd: (-1) fit_bi_lcsm.Rd:35: Lost braces in \itemize; meant \describe ? checkRd: (-1) fit_bi_lcsm.Rd:36: Lost braces in \itemize; meant \describe ? checkRd: (-1) fit_bi_lcsm.Rd:37: Lost braces in \itemize; meant \describe ? checkRd: (-1) fit_bi_lcsm.Rd:42: Lost braces in \itemize; meant \describe ? checkRd: (-1) fit_bi_lcsm.Rd:43: Lost braces in \itemize; meant \describe ? checkRd: (-1) fit_bi_lcsm.Rd:44-45: Lost braces in \itemize; meant \describe ? checkRd: (-1) fit_bi_lcsm.Rd:46: Lost braces in \itemize; meant \describe ? checkRd: (-1) fit_bi_lcsm.Rd:47: Lost braces in \itemize; meant \describe ? checkRd: (-1) fit_bi_lcsm.Rd:48: Lost braces in \itemize; meant \describe ? checkRd: (-1) fit_bi_lcsm.Rd:53: Lost braces in \itemize; meant \describe ? checkRd: (-1) fit_bi_lcsm.Rd:54: Lost braces in \itemize; meant \describe ? checkRd: (-1) fit_bi_lcsm.Rd:55: Lost braces in \itemize; meant \describe ? checkRd: (-1) fit_bi_lcsm.Rd:56: Lost braces in \itemize; meant \describe ? checkRd: (-1) fit_bi_lcsm.Rd:57: Lost braces in \itemize; meant \describe ? checkRd: (-1) fit_bi_lcsm.Rd:58: Lost braces in \itemize; meant \describe ? checkRd: (-1) fit_uni_lcsm.Rd:26: Lost braces in \itemize; meant \describe ? checkRd: (-1) fit_uni_lcsm.Rd:27: Lost braces in \itemize; meant \describe ? checkRd: (-1) fit_uni_lcsm.Rd:28-29: Lost braces in \itemize; meant \describe ? checkRd: (-1) fit_uni_lcsm.Rd:30: Lost braces in \itemize; meant \describe ? checkRd: (-1) fit_uni_lcsm.Rd:31: Lost braces in \itemize; meant \describe ? checkRd: (-1) fit_uni_lcsm.Rd:32: Lost braces in \itemize; meant \describe ? checkRd: (-1) lcsm_data.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) lcsm_data.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) lcsm_data.Rd:12: Lost braces in \itemize; meant \describe ? checkRd: (-1) lcsm_data.Rd:13: Lost braces in \itemize; meant \describe ? checkRd: (-1) lcsm_data.Rd:14: Lost braces in \itemize; meant \describe ? checkRd: (-1) lcsm_data.Rd:15: Lost braces in \itemize; meant \describe ? checkRd: (-1) lcsm_data.Rd:16: Lost braces in \itemize; meant \describe ? checkRd: (-1) lcsm_data.Rd:17: Lost braces in \itemize; meant \describe ? checkRd: (-1) lcsm_data.Rd:18: Lost braces in \itemize; meant \describe ? checkRd: (-1) lcsm_data.Rd:19: Lost braces in \itemize; meant \describe ? checkRd: (-1) lcsm_data.Rd:20: Lost braces in \itemize; meant \describe ? checkRd: (-1) specify_bi_lcsm.Rd:26: Lost braces in \itemize; meant \describe ? checkRd: (-1) specify_bi_lcsm.Rd:27: Lost braces in \itemize; meant \describe ? checkRd: (-1) specify_bi_lcsm.Rd:28: Lost braces in \itemize; meant \describe ? checkRd: (-1) specify_bi_lcsm.Rd:29: Lost braces in \itemize; meant \describe ? checkRd: (-1) specify_bi_lcsm.Rd:30: Lost braces in \itemize; meant \describe ? checkRd: (-1) specify_bi_lcsm.Rd:31: Lost braces in \itemize; meant \describe ? checkRd: (-1) specify_bi_lcsm.Rd:38: Lost braces in \itemize; meant \describe ? checkRd: (-1) specify_bi_lcsm.Rd:39: Lost braces in \itemize; meant \describe ? checkRd: (-1) specify_bi_lcsm.Rd:40: Lost braces in \itemize; meant \describe ? checkRd: (-1) specify_bi_lcsm.Rd:41: Lost braces in \itemize; meant \describe ? checkRd: (-1) specify_bi_lcsm.Rd:42: Lost braces in \itemize; meant \describe ? checkRd: (-1) specify_bi_lcsm.Rd:43: Lost braces in \itemize; meant \describe ? checkRd: (-1) specify_bi_lcsm.Rd:48: Lost braces in \itemize; meant \describe ? checkRd: (-1) specify_bi_lcsm.Rd:49: Lost braces in \itemize; meant \describe ? checkRd: (-1) specify_bi_lcsm.Rd:50: Lost braces in \itemize; meant \describe ? checkRd: (-1) specify_bi_lcsm.Rd:51: Lost braces in \itemize; meant \describe ? checkRd: (-1) specify_bi_lcsm.Rd:52: Lost braces in \itemize; meant \describe ? checkRd: (-1) specify_bi_lcsm.Rd:53: Lost braces in \itemize; meant \describe ? checkRd: (-1) specify_bi_lcsm.Rd:54: Lost braces in \itemize; meant \describe ? checkRd: (-1) specify_bi_lcsm.Rd:55: Lost braces in \itemize; meant \describe ? checkRd: (-1) specify_bi_lcsm.Rd:56: Lost braces in \itemize; meant \describe ? checkRd: (-1) specify_bi_lcsm.Rd:57: Lost braces in \itemize; meant \describe ? * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [0s/1s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [18s/22s] OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed plot_lcsm 7.175 0.352 8.426 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... [11s/14s] OK Running ‘testthat.R’ [10s/13s] * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [49s/61s] OK * checking PDF version of manual ... [6s/8s] OK * checking HTML version of manual ... [1s/2s] OK * checking for non-standard things in the check directory ... OK * DONE Status: 1 NOTE