* installing to library ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages’ * installing *source* package ‘knnmi’ ... ** package ‘knnmi’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.4 (1)’ using C++ compiler: ‘Debian clang version 18.1.4 (1)’ make[1]: Entering directory '/tmp/RtmpOsvYbF/R.INSTALL3583ce67742a97/knnmi/src' clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -Iinclude/ -Iinclude/eigen3/ -DNDEBUG -DEIGEN_NO_DEBUG -DEIGEN_NO_IO -fpic -g -O3 -Wall -pedantic -c CondMutualInformation.cpp -o CondMutualInformation.o In file included from CondMutualInformation.cpp:22: In file included from include/CondMutualInformation.h:23: In file included from include/eigen3/Eigen/Core:382: include/eigen3/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from CondMutualInformation.cpp:22: include/CondMutualInformation.h:49:24: warning: 'CaDrA::CondMutualInformation::compute' hides overloaded virtual function [-Woverloaded-virtual] 49 | virtual double compute(const ArrayXd &x, const ArrayXd& y, const ArrayXd& z) ; | ^ include/MutualInformationBase.h:65:24: note: hidden overloaded virtual function 'CaDrA::MutualInformationBase::compute' declared here: different number of parameters (0 vs 3) 65 | virtual double compute() ; | ^ In file included from CondMutualInformation.cpp:22: include/CondMutualInformation.h:54:24: warning: 'CaDrA::CondMutualInformation::sum_digamma_from_neighbors' hides overloaded virtual function [-Woverloaded-virtual] 54 | virtual double sum_digamma_from_neighbors(MapArrayConst &vec1, MapArrayConst &vec2, const vector &dists) ; | ^ include/MutualInformationBase.h:81:24: note: hidden overloaded virtual function 'CaDrA::MutualInformationBase::sum_digamma_from_neighbors' declared here: different number of parameters (2 vs 3) 81 | virtual double sum_digamma_from_neighbors(MapArrayConst &vec, const vector &dists) ; | ^ 3 warnings generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -Iinclude/ -Iinclude/eigen3/ -DNDEBUG -DEIGEN_NO_DEBUG -DEIGEN_NO_IO -fpic -g -O3 -Wall -pedantic -c MI_Matrix.cpp -o MI_Matrix.o In file included from MI_Matrix.cpp:35: In file included from include/MutualInformation.h:24: In file included from include/eigen3/Eigen/Core:382: include/eigen3/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from MI_Matrix.cpp:35: include/MutualInformation.h:50:18: warning: 'CaDrA::MutualInformation::compute' hides overloaded virtual function [-Woverloaded-virtual] 50 | virtual double compute(const ArrayXd &x, const ArrayXd& y) ; | ^ include/MutualInformationBase.h:65:24: note: hidden overloaded virtual function 'CaDrA::MutualInformationBase::compute' declared here: different number of parameters (0 vs 2) 65 | virtual double compute() ; | ^ In file included from MI_Matrix.cpp:36: include/MutualInformationDiscrete.h:50:18: warning: 'CaDrA::MutualInformationDiscrete::compute' hides overloaded virtual function [-Woverloaded-virtual] 50 | virtual double compute(const ArrayXd &x, const ArrayXi& y) ; | ^ include/MutualInformationBase.h:65:24: note: hidden overloaded virtual function 'CaDrA::MutualInformationBase::compute' declared here: different number of parameters (0 vs 2) 65 | virtual double compute() ; | ^ In file included from MI_Matrix.cpp:37: include/CondMutualInformation.h:49:24: warning: 'CaDrA::CondMutualInformation::compute' hides overloaded virtual function [-Woverloaded-virtual] 49 | virtual double compute(const ArrayXd &x, const ArrayXd& y, const ArrayXd& z) ; | ^ include/MutualInformationBase.h:65:24: note: hidden overloaded virtual function 'CaDrA::MutualInformationBase::compute' declared here: different number of parameters (0 vs 3) 65 | virtual double compute() ; | ^ In file included from MI_Matrix.cpp:37: include/CondMutualInformation.h:54:24: warning: 'CaDrA::CondMutualInformation::sum_digamma_from_neighbors' hides overloaded virtual function [-Woverloaded-virtual] 54 | virtual double sum_digamma_from_neighbors(MapArrayConst &vec1, MapArrayConst &vec2, const vector &dists) ; | ^ include/MutualInformationBase.h:81:24: note: hidden overloaded virtual function 'CaDrA::MutualInformationBase::sum_digamma_from_neighbors' declared here: different number of parameters (2 vs 3) 81 | virtual double sum_digamma_from_neighbors(MapArrayConst &vec, const vector &dists) ; | ^ 5 warnings generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -Iinclude/ -Iinclude/eigen3/ -DNDEBUG -DEIGEN_NO_DEBUG -DEIGEN_NO_IO -fpic -g -O3 -Wall -pedantic -c MutualInformation.cpp -o MutualInformation.o In file included from MutualInformation.cpp:21: In file included from include/MutualInformation.h:24: In file included from include/eigen3/Eigen/Core:382: include/eigen3/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from MutualInformation.cpp:21: include/MutualInformation.h:50:18: warning: 'CaDrA::MutualInformation::compute' hides overloaded virtual function [-Woverloaded-virtual] 50 | virtual double compute(const ArrayXd &x, const ArrayXd& y) ; | ^ include/MutualInformationBase.h:65:24: note: hidden overloaded virtual function 'CaDrA::MutualInformationBase::compute' declared here: different number of parameters (0 vs 2) 65 | virtual double compute() ; | ^ 2 warnings generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -Iinclude/ -Iinclude/eigen3/ -DNDEBUG -DEIGEN_NO_DEBUG -DEIGEN_NO_IO -fpic -g -O3 -Wall -pedantic -c MutualInformationBase.cpp -o MutualInformationBase.o In file included from MutualInformationBase.cpp:22: In file included from include/MutualInformationBase.h:24: In file included from include/eigen3/Eigen/Core:382: include/eigen3/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -Iinclude/ -Iinclude/eigen3/ -DNDEBUG -DEIGEN_NO_DEBUG -DEIGEN_NO_IO -fpic -g -O3 -Wall -pedantic -c MutualInformationDiscrete.cpp -o MutualInformationDiscrete.o In file included from MutualInformationDiscrete.cpp:21: In file included from include/MutualInformationDiscrete.h:24: In file included from include/eigen3/Eigen/Core:382: include/eigen3/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] 14 | #pragma clang diagnostic pop | ^ In file included from MutualInformationDiscrete.cpp:21: include/MutualInformationDiscrete.h:50:18: warning: 'CaDrA::MutualInformationDiscrete::compute' hides overloaded virtual function [-Woverloaded-virtual] 50 | virtual double compute(const ArrayXd &x, const ArrayXi& y) ; | ^ include/MutualInformationBase.h:65:24: note: hidden overloaded virtual function 'CaDrA::MutualInformationBase::compute' declared here: different number of parameters (0 vs 2) 65 | virtual double compute() ; | ^ 2 warnings generated. clang-18 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c knn_mi_lib.c -o knn_mi_lib.o clang-18 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c registerDynamicSymbol.c -o registerDynamicSymbol.o clang++-18 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o knnmi.so CondMutualInformation.o MI_Matrix.o MutualInformation.o MutualInformationBase.o MutualInformationDiscrete.o knn_mi_lib.o registerDynamicSymbol.o -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR make[1]: Leaving directory '/tmp/RtmpOsvYbF/R.INSTALL3583ce67742a97/knnmi/src' make[1]: Entering directory '/tmp/RtmpOsvYbF/R.INSTALL3583ce67742a97/knnmi/src' make[1]: Leaving directory '/tmp/RtmpOsvYbF/R.INSTALL3583ce67742a97/knnmi/src' installing to /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/00LOCK-knnmi/00new/knnmi/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * creating tarball packaged installation of ‘knnmi’ as ‘knnmi_1.0_R_x86_64-pc-linux-gnu.tar.gz’ * DONE (knnmi)