* using log directory ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/hypothesisr.Rcheck’ * using R Under development (unstable) (2024-04-27 r86487) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 18.1.4 (1) Debian flang-new version 18.1.4 (1) * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘hypothesisr/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘hypothesisr’ version ‘0.1.1’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking serialization versions ... OK * checking whether package ‘hypothesisr’ can be installed ... OK See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-debian-clang/hypothesisr-00install.html' for details. * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [0s/0s] OK * checking whether the package can be loaded with stated dependencies ... [0s/0s] OK * checking whether the package can be unloaded cleanly ... [0s/0s] OK * checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK * checking whether the namespace can be unloaded cleanly ... [0s/0s] OK * checking loading without being on the library search path ... [0s/0s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [5s/7s] OK * checking Rd files ... [0s/1s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking LazyData ... NOTE 'LazyData' is specified without a 'data' directory * checking examples ... [1s/2s] ERROR Running examples in ‘hypothesisr-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: hs_read > ### Title: Retrieve a single annotation by ID > ### Aliases: hs_read > > ### ** Examples > > hs_read("WFMnSC3FEeaNvLeGkQeJbg") Error in curl::curl_fetch_memory(url, handle = handle) : Failed writing received data to disk/application Calls: hs_read ... request_fetch -> request_fetch.write_memory -> Execution halted * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... [2s/5s] ERROR Running ‘testthat.R’ [2s/4s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(hypothesisr) > > test_check("hypothesisr") [ FAIL 3 | WARN 0 | SKIP 1 | PASS 7 ] ══ Skipped tests (1) ═══════════════════════════════════════════════════════════ • On CRAN (1): 'test_crud.R:5:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test_search.R:17:3'): hs_search returns a list of the expected format. ── Error in `curl::curl_fetch_memory(url, handle = handle)`: Failed writing received data to disk/application Backtrace: ▆ 1. └─hypothesisr::hs_search(text = "ulysses", limit = 5) at test_search.R:17:3 2. └─hypothesisr:::hs_search_handler(...) 3. └─httr::GET(formatted_url, httr::accept_json()) 4. └─httr:::request_perform(req, hu$handle$handle) 5. ├─httr:::request_fetch(req$output, req$url, handle) 6. └─httr:::request_fetch.write_memory(req$output, req$url, handle) 7. └─curl::curl_fetch_memory(url, handle = handle) ── Error ('test_search.R:31:3'): custom fields in hs_search are correctly added to URL. ── Error in `curl::curl_fetch_memory(url, handle = handle)`: Failed writing received data to disk/application Backtrace: ▆ 1. └─hypothesisr::hs_search(limit = 5, custom = list(tags = "todo")) at test_search.R:31:3 2. └─hypothesisr:::hs_search_handler(...) 3. └─httr::GET(formatted_url, httr::accept_json()) 4. └─httr:::request_perform(req, hu$handle$handle) 5. ├─httr:::request_fetch(req$output, req$url, handle) 6. └─httr:::request_fetch.write_memory(req$output, req$url, handle) 7. └─curl::curl_fetch_memory(url, handle = handle) ── Error ('test_search.R:36:3'): Truncated results generate a message and table attribute. ── Error in `curl::curl_fetch_memory(url, handle = handle)`: Failed writing received data to disk/application Backtrace: ▆ 1. ├─testthat::expect_message(hs_todo <- hs_search(text = "todo")) at test_search.R:36:3 2. │ └─testthat:::quasi_capture(enquo(object), label, capture_messages) 3. │ ├─testthat (local) .capture(...) 4. │ │ └─base::withCallingHandlers(...) 5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 6. └─hypothesisr::hs_search(text = "todo") 7. └─hypothesisr:::hs_search_handler(...) 8. └─httr::GET(formatted_url, httr::accept_json()) 9. └─httr:::request_perform(req, hu$handle$handle) 10. ├─httr:::request_fetch(req$output, req$url, handle) 11. └─httr:::request_fetch.write_memory(req$output, req$url, handle) 12. └─curl::curl_fetch_memory(url, handle = handle) [ FAIL 3 | WARN 0 | SKIP 1 | PASS 7 ] Error: Test failures Execution halted * checking PDF version of manual ... [5s/8s] OK * checking HTML version of manual ... [1s/1s] OK * checking for non-standard things in the check directory ... OK * DONE Status: 2 ERRORs, 1 NOTE