- using R Under development (unstable) (2024-04-27 r86487)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
Debian clang version 18.1.4 (1)
Debian flang-new version 18.1.4 (1)
- running under: Debian GNU/Linux trixie/sid
- using session charset: UTF-8
- checking for file ‘hypothesisr/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘hypothesisr’ version ‘0.1.1’
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking serialization versions ... OK
- checking whether package ‘hypothesisr’ can be installed ... OK
See the install log for details.
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [0s/0s] OK
- checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
- checking whether the package can be unloaded cleanly ... [0s/0s] OK
- checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
- checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
- checking loading without being on the library search path ... [0s/0s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [5s/7s] OK
- checking Rd files ... [0s/1s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking LazyData ... NOTE
'LazyData' is specified without a 'data' directory
- checking examples ... [1s/2s] ERROR
Running examples in ‘hypothesisr-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: hs_read
> ### Title: Retrieve a single annotation by ID
> ### Aliases: hs_read
>
> ### ** Examples
>
> hs_read("WFMnSC3FEeaNvLeGkQeJbg")
Error in curl::curl_fetch_memory(url, handle = handle) :
Failed writing received data to disk/application
Calls: hs_read ... request_fetch -> request_fetch.write_memory -> <Anonymous>
Execution halted
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [2s/5s] ERROR
Running ‘testthat.R’ [2s/4s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(hypothesisr)
>
> test_check("hypothesisr")
[ FAIL 3 | WARN 0 | SKIP 1 | PASS 7 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• On CRAN (1): 'test_crud.R:5:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_search.R:17:3'): hs_search returns a list of the expected format. ──
Error in `curl::curl_fetch_memory(url, handle = handle)`: Failed writing received data to disk/application
Backtrace:
▆
1. └─hypothesisr::hs_search(text = "ulysses", limit = 5) at test_search.R:17:3
2. └─hypothesisr:::hs_search_handler(...)
3. └─httr::GET(formatted_url, httr::accept_json())
4. └─httr:::request_perform(req, hu$handle$handle)
5. ├─httr:::request_fetch(req$output, req$url, handle)
6. └─httr:::request_fetch.write_memory(req$output, req$url, handle)
7. └─curl::curl_fetch_memory(url, handle = handle)
── Error ('test_search.R:31:3'): custom fields in hs_search are correctly added to URL. ──
Error in `curl::curl_fetch_memory(url, handle = handle)`: Failed writing received data to disk/application
Backtrace:
▆
1. └─hypothesisr::hs_search(limit = 5, custom = list(tags = "todo")) at test_search.R:31:3
2. └─hypothesisr:::hs_search_handler(...)
3. └─httr::GET(formatted_url, httr::accept_json())
4. └─httr:::request_perform(req, hu$handle$handle)
5. ├─httr:::request_fetch(req$output, req$url, handle)
6. └─httr:::request_fetch.write_memory(req$output, req$url, handle)
7. └─curl::curl_fetch_memory(url, handle = handle)
── Error ('test_search.R:36:3'): Truncated results generate a message and table attribute. ──
Error in `curl::curl_fetch_memory(url, handle = handle)`: Failed writing received data to disk/application
Backtrace:
▆
1. ├─testthat::expect_message(hs_todo <- hs_search(text = "todo")) at test_search.R:36:3
2. │ └─testthat:::quasi_capture(enquo(object), label, capture_messages)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─hypothesisr::hs_search(text = "todo")
7. └─hypothesisr:::hs_search_handler(...)
8. └─httr::GET(formatted_url, httr::accept_json())
9. └─httr:::request_perform(req, hu$handle$handle)
10. ├─httr:::request_fetch(req$output, req$url, handle)
11. └─httr:::request_fetch.write_memory(req$output, req$url, handle)
12. └─curl::curl_fetch_memory(url, handle = handle)
[ FAIL 3 | WARN 0 | SKIP 1 | PASS 7 ]
Error: Test failures
Execution halted
- checking PDF version of manual ... [5s/8s] OK
- checking HTML version of manual ... [1s/1s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 2 ERRORs, 1 NOTE