* installing to library ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages’ * installing *source* package ‘hibayes’ ... ** package ‘hibayes’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Debian clang version 18.1.4 (1)’ make[1]: Entering directory '/tmp/RtmpPufgdW/R.INSTALL11d8a12a9d1ae9/hibayes/src' clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bigmemory/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Matrix/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -DARMA_64BIT_WORD=1 -fpic -g -O3 -Wall -pedantic -c Bayes.cpp -o Bayes.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bigmemory/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Matrix/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -DARMA_64BIT_WORD=1 -fpic -g -O3 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bigmemory/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Matrix/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -DARMA_64BIT_WORD=1 -fpic -g -O3 -Wall -pedantic -c SBayesD.cpp -o SBayesD.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bigmemory/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Matrix/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -DARMA_64BIT_WORD=1 -fpic -g -O3 -Wall -pedantic -c SBayesS.cpp -o SBayesS.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bigmemory/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Matrix/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -DARMA_64BIT_WORD=1 -fpic -g -O3 -Wall -pedantic -c cg.cpp -o cg.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bigmemory/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Matrix/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -DARMA_64BIT_WORD=1 -fpic -g -O3 -Wall -pedantic -c cutwind.cpp -o cutwind.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bigmemory/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Matrix/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -DARMA_64BIT_WORD=1 -fpic -g -O3 -Wall -pedantic -c read_bed.cpp -o read_bed.o read_bed.cpp:142:9: warning: variable 'n_bytes_read' set but not used [-Wunused-but-set-variable] 142 | size_t n_bytes_read = static_cast(fread(buffer, 1, 3, fin)); | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bigmemory/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Matrix/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -DARMA_64BIT_WORD=1 -fpic -g -O3 -Wall -pedantic -c rm.cpp -o rm.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bigmemory/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Matrix/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -DARMA_64BIT_WORD=1 -fpic -g -O3 -Wall -pedantic -c solver.cpp -o solver.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bigmemory/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Matrix/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -DARMA_64BIT_WORD=1 -fpic -g -O3 -Wall -pedantic -c stats.cpp -o stats.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bigmemory/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Matrix/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -DARMA_64BIT_WORD=1 -fpic -g -O3 -Wall -pedantic -c tXXmat.cpp -o tXXmat.o clang++-18 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o hibayes.so Bayes.o RcppExports.o SBayesD.o SBayesS.o cg.o cutwind.o read_bed.o rm.o solver.o stats.o tXXmat.o -llapack -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lRblas -L/usr/lib/llvm-18/lib -lFortran_main -lFortranRuntime -lFortranDecimal -lm -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR make[1]: Leaving directory '/tmp/RtmpPufgdW/R.INSTALL11d8a12a9d1ae9/hibayes/src' make[1]: Entering directory '/tmp/RtmpPufgdW/R.INSTALL11d8a12a9d1ae9/hibayes/src' make[1]: Leaving directory '/tmp/RtmpPufgdW/R.INSTALL11d8a12a9d1ae9/hibayes/src' installing to /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/00LOCK-hibayes/00new/hibayes/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (hibayes)