* installing to library ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages’
* installing *source* package ‘glmmrOptim’ ...
** package ‘glmmrOptim’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘Debian clang version 18.1.4 (1)’
using C++17
make[1]: Entering directory '/tmp/RtmpfN5AGe/R.INSTALL1dfe0a35da78c4/glmmrOptim/src'
clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I../inst/include/ -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/SparseChol/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rminqa/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o
In file included from RcppExports.cpp:4:
In file included from ./../inst/include/glmmrOptim.h:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/Sparse:26:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/SparseCore:61:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from RcppExports.cpp:4:
In file included from ./../inst/include/glmmrOptim.h:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/Sparse:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/SparseLU:35:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from RcppExports.cpp:4:
In file included from ./../inst/include/glmmrOptim.h:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigenForward.h:31:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from RcppExports.cpp:4:
In file included from ./../inst/include/glmmrOptim.h:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigenForward.h:37:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
In file included from RcppExports.cpp:4:
In file included from ./../inst/include/glmmrOptim.h:6:
In file included from ./../inst/include/optim/optimclass.h:8:
In file included from ./../inst/include/optim/optimderivatives.h:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr.h:3:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/general.h:19:9: warning: 'EIGEN_DEFAULT_DENSE_INDEX_TYPE' macro redefined [-Wmacro-redefined]
19 | #define EIGEN_DEFAULT_DENSE_INDEX_TYPE int
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/Macros.h:33:9: note: previous definition is here
33 | #define EIGEN_DEFAULT_DENSE_INDEX_TYPE std::ptrdiff_t
| ^
In file included from RcppExports.cpp:4:
In file included from ./../inst/include/glmmrOptim.h:6:
In file included from ./../inst/include/optim/optimclass.h:8:
In file included from ./../inst/include/optim/optimderivatives.h:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr.h:3:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/general.h:33:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/SparseChol/include/SparseChol.h:3:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/SparseChol/include/sparsematrix.h:145:7: warning: unused variable 'x' [-Wunused-variable]
145 | int x ;
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/SparseChol/include/sparsematrix.h:415:10: warning: unused variable 'val' [-Wunused-variable]
415 | double val;
| ^~~
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/SparseChol/include/sparsematrix.h:625:10: warning: unused variable 'mem' [-Wunused-variable]
625 | double mem = 0;
| ^~~
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/SparseChol/include/sparsematrix.h:626:7: warning: unused variable 'nz' [-Wunused-variable]
626 | int nz = Ap.back();
| ^~
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/SparseChol/include/sparsematrix.h:787:7: warning: variable 'ncmpa' set but not used [-Wunused-but-set-variable]
787 | int ncmpa = 0 ;
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/SparseChol/include/sparsematrix.h:815:19: warning: unused variable 'ilast' [-Wunused-variable]
815 | int deg, inext, ilast;
| ^~~~~
In file included from RcppExports.cpp:4:
In file included from ./../inst/include/glmmrOptim.h:6:
In file included from ./../inst/include/optim/optimclass.h:8:
In file included from ./../inst/include/optim/optimderivatives.h:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr.h:3:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/general.h:33:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/SparseChol/include/SparseChol.h:4:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/SparseChol/include/operators.h:14:10: warning: unused variable 'val' [-Wunused-variable]
14 | double val;
| ^~~
In file included from RcppExports.cpp:4:
In file included from ./../inst/include/glmmrOptim.h:6:
In file included from ./../inst/include/optim/optimclass.h:8:
In file included from ./../inst/include/optim/optimderivatives.h:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr.h:3:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/general.h:249:11: warning: unused variable 'a' [-Wunused-variable]
249 | float a = std::stod(s);
| ^
In file included from RcppExports.cpp:4:
In file included from ./../inst/include/glmmrOptim.h:6:
In file included from ./../inst/include/optim/optimclass.h:8:
In file included from ./../inst/include/optim/optimderivatives.h:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr.h:5:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/formula.hpp:6:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/formulaparse.h:208:19: warning: variable 'variable_in_data' set but not used [-Wunused-but-set-variable]
208 | bool add_check, variable_in_data;
| ^
In file included from RcppExports.cpp:4:
In file included from ./../inst/include/glmmrOptim.h:6:
In file included from ./../inst/include/optim/optimclass.h:8:
In file included from ./../inst/include/optim/optimderivatives.h:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr.h:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/model.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/modelbits.hpp:6:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/nngpcovariance.hpp:381:14: warning: unused variable 'av' [-Wunused-variable]
381 | double au, av, qf;
| ^~
In file included from RcppExports.cpp:4:
In file included from ./../inst/include/glmmrOptim.h:6:
In file included from ./../inst/include/optim/optimclass.h:8:
In file included from ./../inst/include/optim/optimderivatives.h:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr.h:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/model.hpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/modeloptim.hpp:12:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/optim/optim.h:354:12: warning: unused variable 'result' [-Wunused-variable]
354 | double result = newuoa_closure( &closure, dim, control.npt, current_values.data(), control.rhobeg, control.rhoend, control.maxfun, w.data(), &fn_counter);
| ^~~~~~
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/optim/optim.h:503:16: warning: unused variable 'a' [-Wunused-variable]
503 | double a = eval(current_values, g);
| ^
In file included from RcppExports.cpp:4:
In file included from ./../inst/include/glmmrOptim.h:6:
In file included from ./../inst/include/optim/optimclass.h:8:
./../inst/include/optim/optimderivatives.h:20:9: warning: unused variable 'curr_size' [-Wunused-variable]
20 | int curr_size = FirstOrderDerivatives.size();
| ^~~~~~~~~
In file included from RcppExports.cpp:4:
In file included from ./../inst/include/glmmrOptim.h:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigen.h:26:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp.h:46:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'glmmr::Model<glmmr::ModelBits<glmmr::Covariance, glmmr::LinearPredictor>>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
31 | delete obj;
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer<glmmr::Model<glmmr::ModelBits<glmmr::Covariance, glmmr::LinearPredictor>>>' requested here
54 | void Finalizer(T*) = standard_delete_finalizer<T>,
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'glmmr::Model<glmmr::ModelBits<glmmr::nngpCovariance, glmmr::LinearPredictor>>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
31 | delete obj;
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer<glmmr::Model<glmmr::ModelBits<glmmr::nngpCovariance, glmmr::LinearPredictor>>>' requested here
54 | void Finalizer(T*) = standard_delete_finalizer<T>,
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'glmmr::Model<glmmr::ModelBits<glmmr::hsgpCovariance, glmmr::LinearPredictor>>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
31 | delete obj;
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer<glmmr::Model<glmmr::ModelBits<glmmr::hsgpCovariance, glmmr::LinearPredictor>>>' requested here
54 | void Finalizer(T*) = standard_delete_finalizer<T>,
| ^
In file included from RcppExports.cpp:4:
In file included from ./../inst/include/glmmrOptim.h:6:
In file included from ./../inst/include/optim/optimclass.h:8:
In file included from ./../inst/include/optim/optimderivatives.h:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr.h:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/model.hpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/modeloptim.hpp:12:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/optim/optim.h:15:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/optim/bobyqa_algo.h:201:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/optim/bobyqa_general.h:251:1: warning: unused function 'bobyqa' [-Wunused-function]
251 | bobyqa(const INTEGER n, const INTEGER npt,
| ^~~~~~
In file included from RcppExports.cpp:4:
In file included from ./../inst/include/glmmrOptim.h:6:
In file included from ./../inst/include/optim/optimclass.h:8:
In file included from ./../inst/include/optim/optimderivatives.h:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr.h:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/model.hpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/modeloptim.hpp:12:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/optim/optim.h:413:20: warning: private field 'iter' is not used [-Wunused-private-field]
413 | int iter = 0;
| ^
24 warnings generated.
clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I../inst/include/ -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/SparseChol/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rminqa/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c gd_search.cpp -o gd_search.o
In file included from gd_search.cpp:1:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr.h:3:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/general.h:10:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/Sparse:26:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/SparseCore:61:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from gd_search.cpp:1:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr.h:3:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/general.h:10:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/Sparse:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/SparseLU:35:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from gd_search.cpp:1:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr.h:3:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/general.h:10:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigenForward.h:31:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from gd_search.cpp:1:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr.h:3:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/general.h:10:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigenForward.h:37:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
In file included from gd_search.cpp:1:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr.h:3:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/general.h:19:9: warning: 'EIGEN_DEFAULT_DENSE_INDEX_TYPE' macro redefined [-Wmacro-redefined]
19 | #define EIGEN_DEFAULT_DENSE_INDEX_TYPE int
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/Macros.h:33:9: note: previous definition is here
33 | #define EIGEN_DEFAULT_DENSE_INDEX_TYPE std::ptrdiff_t
| ^
In file included from gd_search.cpp:1:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr.h:3:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/general.h:33:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/SparseChol/include/SparseChol.h:3:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/SparseChol/include/sparsematrix.h:145:7: warning: unused variable 'x' [-Wunused-variable]
145 | int x ;
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/SparseChol/include/sparsematrix.h:415:10: warning: unused variable 'val' [-Wunused-variable]
415 | double val;
| ^~~
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/SparseChol/include/sparsematrix.h:625:10: warning: unused variable 'mem' [-Wunused-variable]
625 | double mem = 0;
| ^~~
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/SparseChol/include/sparsematrix.h:626:7: warning: unused variable 'nz' [-Wunused-variable]
626 | int nz = Ap.back();
| ^~
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/SparseChol/include/sparsematrix.h:787:7: warning: variable 'ncmpa' set but not used [-Wunused-but-set-variable]
787 | int ncmpa = 0 ;
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/SparseChol/include/sparsematrix.h:815:19: warning: unused variable 'ilast' [-Wunused-variable]
815 | int deg, inext, ilast;
| ^~~~~
In file included from gd_search.cpp:1:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr.h:3:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/general.h:33:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/SparseChol/include/SparseChol.h:4:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/SparseChol/include/operators.h:14:10: warning: unused variable 'val' [-Wunused-variable]
14 | double val;
| ^~~
In file included from gd_search.cpp:1:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr.h:3:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/general.h:249:11: warning: unused variable 'a' [-Wunused-variable]
249 | float a = std::stod(s);
| ^
In file included from gd_search.cpp:1:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr.h:5:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/formula.hpp:6:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/formulaparse.h:208:19: warning: variable 'variable_in_data' set but not used [-Wunused-but-set-variable]
208 | bool add_check, variable_in_data;
| ^
In file included from gd_search.cpp:1:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr.h:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/model.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/modelbits.hpp:6:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/nngpcovariance.hpp:381:14: warning: unused variable 'av' [-Wunused-variable]
381 | double au, av, qf;
| ^~
In file included from gd_search.cpp:1:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr.h:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/model.hpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/modeloptim.hpp:12:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/optim/optim.h:354:12: warning: unused variable 'result' [-Wunused-variable]
354 | double result = newuoa_closure( &closure, dim, control.npt, current_values.data(), control.rhobeg, control.rhoend, control.maxfun, w.data(), &fn_counter);
| ^~~~~~
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/optim/optim.h:503:16: warning: unused variable 'a' [-Wunused-variable]
503 | double a = eval(current_values, g);
| ^
In file included from gd_search.cpp:2:
In file included from ../inst/include/glmmrOptim.h:6:
In file included from ../inst/include/optim/optimclass.h:8:
../inst/include/optim/optimderivatives.h:20:9: warning: unused variable 'curr_size' [-Wunused-variable]
20 | int curr_size = FirstOrderDerivatives.size();
| ^~~~~~~~~
In file included from gd_search.cpp:1:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr.h:3:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/general.h:10:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigen.h:26:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp.h:46:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'glmmr::Model<glmmr::ModelBits<glmmr::Covariance, glmmr::LinearPredictor>>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
31 | delete obj;
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer<glmmr::Model<glmmr::ModelBits<glmmr::Covariance, glmmr::LinearPredictor>>>' requested here
54 | void Finalizer(T*) = standard_delete_finalizer<T>,
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'glmmr::Model<glmmr::ModelBits<glmmr::nngpCovariance, glmmr::LinearPredictor>>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
31 | delete obj;
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer<glmmr::Model<glmmr::ModelBits<glmmr::nngpCovariance, glmmr::LinearPredictor>>>' requested here
54 | void Finalizer(T*) = standard_delete_finalizer<T>,
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'glmmr::Model<glmmr::ModelBits<glmmr::hsgpCovariance, glmmr::LinearPredictor>>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
31 | delete obj;
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer<glmmr::Model<glmmr::ModelBits<glmmr::hsgpCovariance, glmmr::LinearPredictor>>>' requested here
54 | void Finalizer(T*) = standard_delete_finalizer<T>,
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'glmmr::Covariance' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
31 | delete obj;
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer<glmmr::Covariance>' requested here
54 | void Finalizer(T*) = standard_delete_finalizer<T>,
| ^
In file included from gd_search.cpp:1:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr.h:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/model.hpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/modeloptim.hpp:12:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/optim/optim.h:15:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/optim/bobyqa_algo.h:201:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/optim/bobyqa_general.h:251:1: warning: unused function 'bobyqa' [-Wunused-function]
251 | bobyqa(const INTEGER n, const INTEGER npt,
| ^~~~~~
In file included from gd_search.cpp:1:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr.h:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/model.hpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/modeloptim.hpp:12:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/optim/optim.h:413:20: warning: private field 'iter' is not used [-Wunused-private-field]
413 | int iter = 0;
| ^
25 warnings generated.
clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I../inst/include/ -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/SparseChol/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rminqa/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c openmp_utils.cpp -o openmp_utils.o
In file included from openmp_utils.cpp:2:
In file included from ../inst/include/glmmrOptim.h:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/Sparse:26:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/SparseCore:61:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from openmp_utils.cpp:2:
In file included from ../inst/include/glmmrOptim.h:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/Sparse:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/SparseLU:35:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from openmp_utils.cpp:2:
In file included from ../inst/include/glmmrOptim.h:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigenForward.h:31:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from openmp_utils.cpp:2:
In file included from ../inst/include/glmmrOptim.h:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigenForward.h:37:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
In file included from openmp_utils.cpp:2:
In file included from ../inst/include/glmmrOptim.h:6:
In file included from ../inst/include/optim/optimclass.h:8:
In file included from ../inst/include/optim/optimderivatives.h:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr.h:3:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/general.h:19:9: warning: 'EIGEN_DEFAULT_DENSE_INDEX_TYPE' macro redefined [-Wmacro-redefined]
19 | #define EIGEN_DEFAULT_DENSE_INDEX_TYPE int
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/Core/util/Macros.h:33:9: note: previous definition is here
33 | #define EIGEN_DEFAULT_DENSE_INDEX_TYPE std::ptrdiff_t
| ^
In file included from openmp_utils.cpp:2:
In file included from ../inst/include/glmmrOptim.h:6:
In file included from ../inst/include/optim/optimclass.h:8:
In file included from ../inst/include/optim/optimderivatives.h:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr.h:3:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/general.h:33:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/SparseChol/include/SparseChol.h:3:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/SparseChol/include/sparsematrix.h:145:7: warning: unused variable 'x' [-Wunused-variable]
145 | int x ;
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/SparseChol/include/sparsematrix.h:415:10: warning: unused variable 'val' [-Wunused-variable]
415 | double val;
| ^~~
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/SparseChol/include/sparsematrix.h:625:10: warning: unused variable 'mem' [-Wunused-variable]
625 | double mem = 0;
| ^~~
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/SparseChol/include/sparsematrix.h:626:7: warning: unused variable 'nz' [-Wunused-variable]
626 | int nz = Ap.back();
| ^~
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/SparseChol/include/sparsematrix.h:787:7: warning: variable 'ncmpa' set but not used [-Wunused-but-set-variable]
787 | int ncmpa = 0 ;
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/SparseChol/include/sparsematrix.h:815:19: warning: unused variable 'ilast' [-Wunused-variable]
815 | int deg, inext, ilast;
| ^~~~~
In file included from openmp_utils.cpp:2:
In file included from ../inst/include/glmmrOptim.h:6:
In file included from ../inst/include/optim/optimclass.h:8:
In file included from ../inst/include/optim/optimderivatives.h:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr.h:3:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/general.h:33:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/SparseChol/include/SparseChol.h:4:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/SparseChol/include/operators.h:14:10: warning: unused variable 'val' [-Wunused-variable]
14 | double val;
| ^~~
In file included from openmp_utils.cpp:2:
In file included from ../inst/include/glmmrOptim.h:6:
In file included from ../inst/include/optim/optimclass.h:8:
In file included from ../inst/include/optim/optimderivatives.h:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr.h:3:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/general.h:249:11: warning: unused variable 'a' [-Wunused-variable]
249 | float a = std::stod(s);
| ^
In file included from openmp_utils.cpp:2:
In file included from ../inst/include/glmmrOptim.h:6:
In file included from ../inst/include/optim/optimclass.h:8:
In file included from ../inst/include/optim/optimderivatives.h:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr.h:5:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/formula.hpp:6:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/formulaparse.h:208:19: warning: variable 'variable_in_data' set but not used [-Wunused-but-set-variable]
208 | bool add_check, variable_in_data;
| ^
In file included from openmp_utils.cpp:2:
In file included from ../inst/include/glmmrOptim.h:6:
In file included from ../inst/include/optim/optimclass.h:8:
In file included from ../inst/include/optim/optimderivatives.h:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr.h:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/model.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/modelbits.hpp:6:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/nngpcovariance.hpp:381:14: warning: unused variable 'av' [-Wunused-variable]
381 | double au, av, qf;
| ^~
In file included from openmp_utils.cpp:2:
In file included from ../inst/include/glmmrOptim.h:6:
In file included from ../inst/include/optim/optimclass.h:8:
In file included from ../inst/include/optim/optimderivatives.h:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr.h:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/model.hpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/modeloptim.hpp:12:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/optim/optim.h:354:12: warning: unused variable 'result' [-Wunused-variable]
354 | double result = newuoa_closure( &closure, dim, control.npt, current_values.data(), control.rhobeg, control.rhoend, control.maxfun, w.data(), &fn_counter);
| ^~~~~~
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/optim/optim.h:503:16: warning: unused variable 'a' [-Wunused-variable]
503 | double a = eval(current_values, g);
| ^
In file included from openmp_utils.cpp:2:
In file included from ../inst/include/glmmrOptim.h:6:
In file included from ../inst/include/optim/optimclass.h:8:
../inst/include/optim/optimderivatives.h:20:9: warning: unused variable 'curr_size' [-Wunused-variable]
20 | int curr_size = FirstOrderDerivatives.size();
| ^~~~~~~~~
openmp_utils.cpp:19:8: warning: variable 'a' set but not used [-Wunused-but-set-variable]
19 | int a, b; // needed for defines on machines without openmp
| ^
In file included from openmp_utils.cpp:2:
In file included from ../inst/include/glmmrOptim.h:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/RcppEigen.h:26:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp.h:46:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'glmmr::Model<glmmr::ModelBits<glmmr::Covariance, glmmr::LinearPredictor>>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
31 | delete obj;
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer<glmmr::Model<glmmr::ModelBits<glmmr::Covariance, glmmr::LinearPredictor>>>' requested here
54 | void Finalizer(T*) = standard_delete_finalizer<T>,
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'glmmr::Model<glmmr::ModelBits<glmmr::nngpCovariance, glmmr::LinearPredictor>>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
31 | delete obj;
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer<glmmr::Model<glmmr::ModelBits<glmmr::nngpCovariance, glmmr::LinearPredictor>>>' requested here
54 | void Finalizer(T*) = standard_delete_finalizer<T>,
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'glmmr::Model<glmmr::ModelBits<glmmr::hsgpCovariance, glmmr::LinearPredictor>>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
31 | delete obj;
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer<glmmr::Model<glmmr::ModelBits<glmmr::hsgpCovariance, glmmr::LinearPredictor>>>' requested here
54 | void Finalizer(T*) = standard_delete_finalizer<T>,
| ^
In file included from openmp_utils.cpp:2:
In file included from ../inst/include/glmmrOptim.h:6:
In file included from ../inst/include/optim/optimclass.h:8:
In file included from ../inst/include/optim/optimderivatives.h:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr.h:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/model.hpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/modeloptim.hpp:12:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/optim/optim.h:15:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/optim/bobyqa_algo.h:201:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/optim/bobyqa_general.h:251:1: warning: unused function 'bobyqa' [-Wunused-function]
251 | bobyqa(const INTEGER n, const INTEGER npt,
| ^~~~~~
In file included from openmp_utils.cpp:2:
In file included from ../inst/include/glmmrOptim.h:6:
In file included from ../inst/include/optim/optimclass.h:8:
In file included from ../inst/include/optim/optimderivatives.h:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr.h:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/model.hpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/modeloptim.hpp:12:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/glmmrBase/include/glmmr/optim/optim.h:413:20: warning: private field 'iter' is not used [-Wunused-private-field]
413 | int iter = 0;
| ^
25 warnings generated.
clang++-18 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o glmmrOptim.so RcppExports.o gd_search.o openmp_utils.o -llapack -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lRblas -L/usr/lib/llvm-18/lib -lFortran_main -lFortranRuntime -lFortranDecimal -lm -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpfN5AGe/R.INSTALL1dfe0a35da78c4/glmmrOptim/src'
make[1]: Entering directory '/tmp/RtmpfN5AGe/R.INSTALL1dfe0a35da78c4/glmmrOptim/src'
make[1]: Leaving directory '/tmp/RtmpfN5AGe/R.INSTALL1dfe0a35da78c4/glmmrOptim/src'
installing to /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/00LOCK-glmmrOptim/00new/glmmrOptim/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (glmmrOptim)