* installing to library ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages’ * installing *source* package ‘genepop’ ... ** package ‘genepop’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Debian clang version 18.1.4 (1)’ using C++11 make[1]: Entering directory '/tmp/Rtmpx8HWzX/R.INSTALL1983f405b1bab/genepop/src' clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DCOMPATIBILITYRCPP -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c CT_tests.cpp -o CT_tests.o In file included from CT_tests.cpp:40: ./CT_tests.h:115:42: warning: unused variable 'pp' [-Wunused-variable] 115 | std::vector::iterator p,pp; // CPopulation contient les popName() | ^~ ./CT_tests.h:116:39: warning: unused variable 'p1' [-Wunused-variable] 116 | std::vector::iterator p1,p2; // CGenotypes contient toute l'info sauf les popName() | ^~ ./CT_tests.h:116:42: warning: unused variable 'p2' [-Wunused-variable] 116 | std::vector::iterator p1,p2; // CGenotypes contient toute l'info sauf les popName() | ^~ CT_tests.cpp:783:34: warning: unused variable 'p1' [-Wunused-variable] 783 | vector::iterator p1,p2; // CGenotypes contient toute l'info sauf les popName() | ^~ CT_tests.cpp:783:37: warning: unused variable 'p2' [-Wunused-variable] 783 | vector::iterator p1,p2; // CGenotypes contient toute l'info sauf les popName() | ^~ 5 warnings generated. clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DCOMPATIBILITYRCPP -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c F_est.cpp -o F_est.o F_est.cpp:2050:9: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation] 2050 | int npairs=0; | ^ F_est.cpp:2032:5: note: previous statement is here 2032 | for (s1=0; s1::iterator p,pp; // CPopulation contient les popName() | ^~ ./CT_tests.h:116:39: warning: unused variable 'p1' [-Wunused-variable] 116 | std::vector::iterator p1,p2; // CGenotypes contient toute l'info sauf les popName() | ^~ ./CT_tests.h:116:42: warning: unused variable 'p2' [-Wunused-variable] 116 | std::vector::iterator p1,p2; // CGenotypes contient toute l'info sauf les popName() | ^~ GenepopS.cpp:1491:16: warning: variable 'popit' set but not used [-Wunused-but-set-variable] 1491 | size_t nb_all,popit; | ^ 4 warnings generated. clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DCOMPATIBILITYRCPP -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c HW_tests.cpp -o HW_tests.o HW_tests.cpp:247:23: warning: variable 'necess_mark' set but not used [-Wunused-but-set-variable] 247 | int possible_exact=0, necess_mark=0; | ^ HW_tests.cpp:1650:10: warning: variable 'kfi' set but not used [-Wunused-but-set-variable] 1650 | size_t kfi,allele, k; | ^ 2 warnings generated. clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DCOMPATIBILITYRCPP -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c RGenepop.cpp -o RGenepop.o clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DCOMPATIBILITYRCPP -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c RcppExports.cpp -o RcppExports.o clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DCOMPATIBILITYRCPP -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c bootstrap.cpp -o bootstrap.o clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DCOMPATIBILITYRCPP -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c conversions.cpp -o conversions.o clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DCOMPATIBILITYRCPP -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c genepop.cpp -o genepop.o clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DCOMPATIBILITYRCPP -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c multimig.cpp -o multimig.o clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DCOMPATIBILITYRCPP -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c proba.cpp -o proba.o clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DCOMPATIBILITYRCPP -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c settings.cpp -o settings.o clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DCOMPATIBILITYRCPP -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c tools.cpp -o tools.o clang++-18 -std=gnu++11 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o genepop.so CT_tests.o F_est.o GenepopS.o HW_tests.o RGenepop.o RcppExports.o bootstrap.o conversions.o genepop.o multimig.o proba.o settings.o tools.o -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR make[1]: Leaving directory '/tmp/Rtmpx8HWzX/R.INSTALL1983f405b1bab/genepop/src' make[1]: Entering directory '/tmp/Rtmpx8HWzX/R.INSTALL1983f405b1bab/genepop/src' make[1]: Leaving directory '/tmp/Rtmpx8HWzX/R.INSTALL1983f405b1bab/genepop/src' installing to /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/00LOCK-genepop/00new/genepop/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * creating tarball packaged installation of ‘genepop’ as ‘genepop_1.2.2_R_x86_64-pc-linux-gnu.tar.gz’ * DONE (genepop)