* installing to library ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages’
* installing *source* package ‘fishmethods’ ...
** package ‘fishmethods’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘Debian clang version 18.1.4 (1)’
make[1]: Entering directory '/tmp/Rtmpv92Y96/R.INSTALL1f70ff51e11f2a/fishmethods/src'
clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TMB/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic  -c init_dummy_file.cpp -o init_dummy_file.o
(cd TMB; /home/hornik/tmp/R.check/r-devel-clang/Work/build/bin/Rscript \
--no-save --no-restore compile.R '')
Note: Using Makevars in /home/hornik/.R/Makevars-clang 
using C++ compiler: ‘Debian clang version 18.1.4 (1)’
make[2]: Entering directory '/tmp/Rtmpv92Y96/R.INSTALL1f70ff51e11f2a/fishmethods/src/TMB'
clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TMB/include" -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include"   -DTMB_EIGEN_DISABLE_WARNINGS   -DTMB_LIB_INIT=R_init_fishmethods_TMBExports  -DCPPAD_FRAMEWORK -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TMB/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic  -c fishmethods_TMBExports.cpp -o fishmethods_TMBExports.o
In file included from fishmethods_TMBExports.cpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TMB/include/TMB.hpp:96:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/Sparse:26:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/SparseCore:61:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from fishmethods_TMBExports.cpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TMB/include/TMB.hpp:96:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/Sparse:29:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/SparseLU:35:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
3 warnings generated.
clang++-18 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o fishmethods_TMBExports.so fishmethods_TMBExports.o -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[2]: Leaving directory '/tmp/Rtmpv92Y96/R.INSTALL1f70ff51e11f2a/fishmethods/src/TMB'
make[2]: Entering directory '/tmp/Rtmpv92Y96/R.INSTALL1f70ff51e11f2a/fishmethods/src/TMB'
make[2]: Leaving directory '/tmp/Rtmpv92Y96/R.INSTALL1f70ff51e11f2a/fishmethods/src/TMB'
[1] TRUE
clang++-18 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o fishmethods.so init_dummy_file.o -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/tmp/Rtmpv92Y96/R.INSTALL1f70ff51e11f2a/fishmethods/src'
make[1]: Entering directory '/tmp/Rtmpv92Y96/R.INSTALL1f70ff51e11f2a/fishmethods/src'
make[1]: Leaving directory '/tmp/Rtmpv92Y96/R.INSTALL1f70ff51e11f2a/fishmethods/src'
installing to /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/00LOCK-fishmethods/00new/fishmethods/libs
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (fishmethods)