* using log directory ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/fields.Rcheck’ * using R Under development (unstable) (2024-04-27 r86487) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 18.1.4 (1) Debian flang-new version 18.1.4 (1) * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘fields/DESCRIPTION’ ... OK * this is package ‘fields’ version ‘15.2’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘fields’ can be installed ... OK See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-debian-clang/fields-00install.html' for details. * used C compiler: ‘Debian clang version 18.1.4 (1)’ * used Fortran compiler: ‘Debian flang-new version 18.1.4 (1)’ * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [2s/2s] OK * checking whether the package can be loaded with stated dependencies ... [2s/2s] OK * checking whether the package can be unloaded cleanly ... [2s/2s] OK * checking whether the namespace can be loaded with stated dependencies ... [1s/2s] OK * checking whether the namespace can be unloaded cleanly ... [2s/2s] OK * checking loading without being on the library search path ... [2s/2s] OK * checking whether startup messages can be suppressed ... [2s/2s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [55s/63s] OK * checking Rd files ... [2s/3s] NOTE checkRd: (-1) FORTRAN.internal.Rd:50: Lost braces 50 | \item{evlpoly}{evaluates a univariate polynomial. See code{fields.evlpoly}} | ^ checkRd: (-1) FORTRAN.internal.Rd:51: Lost braces 51 | \item{evlpoly2}{ evaluates a multivariate polynomial. See code{fields.evlpoly2}} | ^ checkRd: (-1) registeredC.Rd:77: Lost braces 77 | \item{addToDiagC}{ adds diagonal elements to a matrix. See code{mKrig}.} | ^ checkRd: (-1) sim.Krig.Rd:200-221: Lost braces 200 | \code{simLocal.spatialProcess}{This function is | ^ checkRd: (-1) tim.colors.Rd:96: Lost braces 96 | \item{\dots}{Additional plotting arguments to code{image.plot}} | ^ * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [1s/1s] OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking pragmas in C/C++ headers and code ... OK * checking compilation flags used ... OK * checking compiled code ... OK * checking usage of KIND in Fortran files ... OK * checking examples ... [39s/43s] OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed cover.design 6.683 0.004 7.26 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... [86s/104s] OK Running ‘Krig.Z.test.R’ [2s/3s] Comparing ‘Krig.Z.test.Rout’ to ‘Krig.Z.test.Rout.save’ ... OK Running ‘Krig.se.W.R’ [2s/2s] Comparing ‘Krig.se.W.Rout’ to ‘Krig.se.W.Rout.save’ ... OK Running ‘Krig.se.grid.test.R’ [2s/2s] Comparing ‘Krig.se.grid.test.Rout’ to ‘Krig.se.grid.test.Rout.save’ ... OK Running ‘Krig.se.test.R’ [9s/11s] Comparing ‘Krig.se.test.Rout’ to ‘Krig.se.test.Rout.save’ ... OK Running ‘Krig.test.R’ [2s/3s] Comparing ‘Krig.test.Rout’ to ‘Krig.test.Rout.save’ ... OK Running ‘Krig.test.W.R’ [2s/2s] Comparing ‘Krig.test.W.Rout’ to ‘Krig.test.W.Rout.save’ ... OK Running ‘KrigGCVREML.test.R’ [2s/3s] Comparing ‘KrigGCVREML.test.Rout’ to ‘KrigGCVREML.test.Rout.save’ ... OK Running ‘Likelihood.test.R’ [2s/3s] Comparing ‘Likelihood.test.Rout’ to ‘Likelihood.test.Rout.save’ ... OK Running ‘SEFixedParameters.R’ [2s/3s] Comparing ‘SEFixedParameters.Rout’ to ‘SEFixedParameters.Rout.save’ ... OK Running ‘Tps.test.R’ [4s/5s] Comparing ‘Tps.test.Rout’ to ‘Tps.test.Rout.save’ ... OK Running ‘Wend.test.R’ [2s/2s] Comparing ‘Wend.test.Rout’ to ‘Wend.test.Rout.save’ ... OK Running ‘cov.test.R’ [2s/2s] Comparing ‘cov.test.Rout’ to ‘cov.test.Rout.save’ ... OK Running ‘cov.test2.R’ [2s/2s] Comparing ‘cov.test2.Rout’ to ‘cov.test2.Rout.save’ ... OK Running ‘derivative.test.R’ [4s/5s] Comparing ‘derivative.test.Rout’ to ‘derivative.test.Rout.save’ ... OK Running ‘diag.multiply.test.R’ [2s/2s] Comparing ‘diag.multiply.test.Rout’ to ‘diag.multiply.test.Rout.save’ ... OK Running ‘evlpoly.test.R’ [2s/2s] Comparing ‘evlpoly.test.Rout’ to ‘evlpoly.test.Rout.save’ ... OK Running ‘fastTpsPredict.test.R’ [2s/2s] Comparing ‘fastTpsPredict.test.Rout’ to ‘fastTpsPredict.test.Rout.save’ ... OK Running ‘mKrig.R’ [0s/0s] Running ‘mKrig.Z.R’ [2s/3s] Comparing ‘mKrig.Z.Rout’ to ‘mKrig.Z.Rout.save’ ... OK Running ‘mKrig.parameters.test.R’ [4s/4s] Comparing ‘mKrig.parameters.test.Rout’ to ‘mKrig.parameters.test.Rout.save’ ... OK Running ‘mKrig.se.test.R’ [2s/2s] Comparing ‘mKrig.se.test.Rout’ to ‘mKrig.se.test.Rout.save’ ... OK Running ‘mKrig.test.R’ [3s/4s] Comparing ‘mKrig.test.Rout’ to ‘mKrig.test.Rout.save’ ... OK Running ‘mKrigMLETest.R’ [9s/11s] Comparing ‘mKrigMLETest.Rout’ to ‘mKrigMLETest.Rout.save’ ... OK Running ‘mKrigREMLTest.R’ [5s/6s] Comparing ‘mKrigREMLTest.Rout’ to ‘mKrigREMLTest.Rout.save’ ... OK Running ‘misc.test.R’ [2s/2s] Comparing ‘misc.test.Rout’ to ‘misc.test.Rout.save’ ... OK Running ‘offGridWeights.test.R’ [2s/2s] Comparing ‘offGridWeights.test.Rout’ to ‘offGridWeights.test.Rout.save’ ... OK Running ‘offGridWeightsNew.test.R’ [2s/2s] Running ‘spam.test.R’ [2s/2s] Comparing ‘spam.test.Rout’ to ‘spam.test.Rout.save’ ... OK Running ‘sreg.test.R’ [2s/3s] Comparing ‘sreg.test.Rout’ to ‘sreg.test.Rout.save’ ... OK Running ‘testZCommon.R’ [2s/2s] Comparing ‘testZCommon.Rout’ to ‘testZCommon.Rout.save’ ... OK Running ‘vgram.test.R’ [2s/2s] Comparing ‘vgram.test.Rout’ to ‘vgram.test.Rout.save’ ... OK Running ‘vgram2.test.R’ [2s/2s] Comparing ‘vgram2.test.Rout’ to ‘vgram2.test.Rout.save’ ... OK * checking PDF version of manual ... [15s/19s] OK * checking HTML version of manual ... [10s/15s] OK * checking for non-standard things in the check directory ... OK * DONE Status: 1 NOTE