* installing to library ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages’ * installing *source* package ‘epiworldR’ ... ** package ‘epiworldR’ successfully unpacked and MD5 sums checked ** using staged installation checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether clang++-18 -std=gnu++17 accepts -g... yes checking for clang++-18 -std=gnu++17 option to enable C++11 features... none needed checking how to run the C++ preprocessor... clang++-18 -std=gnu++17 -E checking whether the compiler supports GNU C++... (cached) yes checking whether clang++-18 -std=gnu++17 accepts -g... (cached) yes checking for clang++-18 -std=gnu++17 option to enable C++11 features... (cached) none needed checking whether we have a suitable tempdir... /tmp checking whether R CMD SHLIB can already compile programs using OpenMP... no checking whether g++ version is sufficient... almost configure: WARNING: Compiler self-identifies as being compliant with GNUC extensions but is not g++. checking for macOS... no checking whether to build the dev version... configure: creating ./config.status config.status: creating src/Makevars config.status: creating R/epiworldR-package.R ** libs using C++ compiler: ‘Debian clang version 18.1.4 (1)’ make[1]: Entering directory '/tmp/Rtmp87QAts/R.INSTALL4041245f3f26c/epiworldR/src' clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include/ -Dprintf_epiworld=Rprintf -fpic -g -O3 -Wall -pedantic -c actions.cpp -o actions.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include/ -Dprintf_epiworld=Rprintf -fpic -g -O3 -Wall -pedantic -c agents.cpp -o agents.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include/ -Dprintf_epiworld=Rprintf -fpic -g -O3 -Wall -pedantic -c cpp11.cpp -o cpp11.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include/ -Dprintf_epiworld=Rprintf -fpic -g -O3 -Wall -pedantic -c db.cpp -o db.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include/ -Dprintf_epiworld=Rprintf -fpic -g -O3 -Wall -pedantic -c epimodels.cpp -o epimodels.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include/ -Dprintf_epiworld=Rprintf -fpic -g -O3 -Wall -pedantic -c model.cpp -o model.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include/ -Dprintf_epiworld=Rprintf -fpic -g -O3 -Wall -pedantic -c tool.cpp -o tool.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include/ -Dprintf_epiworld=Rprintf -fpic -g -O3 -Wall -pedantic -c virus.cpp -o virus.o In file included from virus.cpp:4: In file included from ./epiworld-common.h:4: In file included from ../inst/include/epiworld/epiworld.hpp:54: ../inst/include/epiworld/virus-meat.hpp:59:47: warning: lambda capture 'logit' is not used [-Wunused-lambda-capture] 59 | VirusFun fun_infect = [coefs_f,vars,logit]( | ^ virus.cpp:108:11: note: in instantiation of function template specialization 'epiworld::virus_fun_logit' requested here 108 | virus_fun_logit( | ^ 1 warning generated. clang++-18 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o epiworldR.so actions.o agents.o cpp11.o db.o epimodels.o model.o tool.o virus.o -llapack -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lRblas -L/usr/lib/llvm-18/lib -lFortran_main -lFortranRuntime -lFortranDecimal -lm -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR make[1]: Leaving directory '/tmp/Rtmp87QAts/R.INSTALL4041245f3f26c/epiworldR/src' make[1]: Entering directory '/tmp/Rtmp87QAts/R.INSTALL4041245f3f26c/epiworldR/src' make[1]: Leaving directory '/tmp/Rtmp87QAts/R.INSTALL4041245f3f26c/epiworldR/src' installing to /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/00LOCK-epiworldR/00new/epiworldR/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (epiworldR)