• using R Under development (unstable) (2024-04-29 r86495)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     Debian clang version 18.1.4 (1)     Debian flang-new version 18.1.4 (1)
• running under: Debian GNU/Linux trixie/sid
• using session charset: UTF-8
• checking for file ‘ecospat/DESCRIPTION’ ... OK
• this is package ‘ecospat’ version ‘4.0.0’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘ecospat’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/1s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/1s] OK
• checking whether the package can be unloaded cleanly ... [0s/1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
• checking loading without being on the library search path ... [0s/0s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... WARNING Missing or unexported object: ‘biomod2::BIOMOD_ModelingOptions’
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [39s/46s] OK
• checking Rd files ... [1s/2s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... WARNING Missing link or links in Rd file 'ecospat.CCV.modeling.Rd':   ‘[biomod2]{BIOMOD_ModelingOptions}’ Missing link or links in Rd file 'ecospat.ESM.Modeling.Rd':   ‘[biomod2]{BIOMOD_ModelingOptions}’ See section 'Cross-references' in the 'Writing R Extensions' manual.
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [1s/1s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [36s/50s] OK Examples with CPU (user + system) or elapsed time > 5s                 user system elapsed ecospat.Epred 12.723 0.430 15.474 ecospat.cv.rf 4.716 0.195 7.233 ecospat.mdr 4.828 0.072 6.771
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [62s/80s] ERROR Error(s) in re-building vignettes:   ... --- re-building ‘vignette_ecospat_package.Rmd’ using rmarkdown Quitting from lines at lines 387-397 [unnamed-chunk-31] (vignette_ecospat_package.Rmd) Error: processing vignette 'vignette_ecospat_package.Rmd' failed with diagnostics: 'bm_DefaultModelingOptions' is not an exported object from 'namespace:biomod2' --- failed re-building ‘vignette_ecospat_package.Rmd’ SUMMARY: processing the following file failed:   ‘vignette_ecospat_package.Rmd’ Error: Vignette re-building failed. Execution halted
• checking PDF version of manual ... [10s/12s] OK
• checking HTML version of manual ... [5s/8s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 ERROR, 2 WARNINGs