* installing to library ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages’ * installing *source* package ‘divest’ ... ** package ‘divest’ successfully unpacked and MD5 sums checked ** using staged installation checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether clang++-18 -std=gnu++17 accepts -g... yes checking for clang++-18 -std=gnu++17 option to enable C++11 features... none needed checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for fmemopen... yes checking for library containing opj_version... -lopenjp2 checking for openjpeg.h... no checking for library containing jas_getversion... no configure: creating ./config.status config.status: creating src/Makevars ** libs using C++ compiler: ‘Debian clang version 18.1.4 (1)’ make[1]: Entering directory '/tmp/RtmpMAAd7U/R.INSTALL337e286a21b1ce/divest/src' clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DUSING_R -DmyDisableOpenJPEG -DHAVE_FMEMOPEN -I. -Idcm2niix -Iujpeg -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RNifti/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c main.cpp -o main.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DUSING_R -DmyDisableOpenJPEG -DHAVE_FMEMOPEN -I. -Idcm2niix -Iujpeg -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RNifti/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c dcm2niix/jpg_0XC3.cpp -o dcm2niix/jpg_0XC3.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DUSING_R -DmyDisableOpenJPEG -DHAVE_FMEMOPEN -I. -Idcm2niix -Iujpeg -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RNifti/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c dcm2niix/nifti1_io_core.cpp -o dcm2niix/nifti1_io_core.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DUSING_R -DmyDisableOpenJPEG -DHAVE_FMEMOPEN -I. -Idcm2niix -Iujpeg -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RNifti/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c dcm2niix/nii_dicom.cpp -o dcm2niix/nii_dicom.o dcm2niix/nii_dicom.cpp:1912:6: warning: variable 'patientPositionNumPhilips' set but not used [-Wunused-but-set-variable] 1912 | int patientPositionNumPhilips = 0; | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DUSING_R -DmyDisableOpenJPEG -DHAVE_FMEMOPEN -I. -Idcm2niix -Iujpeg -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RNifti/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c dcm2niix/nii_dicom_batch.cpp -o dcm2niix/nii_dicom_batch.o dcm2niix/nii_dicom_batch.cpp:2505:7: warning: variable 'isIsotropic' set but not used [-Wunused-but-set-variable] 2505 | bool isIsotropic = false; | ^ dcm2niix/nii_dicom_batch.cpp:3268:4: warning: misleading indentation; statement is not part of the previous 'if' [-Wmisleading-indentation] 3268 | fprintf(fp, kDCMdate); | ^ dcm2niix/nii_dicom_batch.cpp:3266:3: note: previous statement is here 3266 | if (fp != NULL) | ^ dcm2niix/nii_dicom_batch.cpp:6334:9: warning: unused variable 'pf' [-Wunused-variable] 6334 | float pf = 1.0f; //partial fourier | ^~ dcm2niix/nii_dicom_batch.cpp:6597:7: warning: variable 'isDirLabel' set but not used [-Wunused-but-set-variable] 6597 | bool isDirLabel = false; //report phase encoding direction | ^ dcm2niix/nii_dicom_batch.cpp:6768:6: warning: variable 'nVol' set but not used [-Wunused-but-set-variable] 6768 | int nVol = 1; | ^ dcm2niix/nii_dicom_batch.cpp:7728:11: warning: variable 'slicePositionRepeats' set but not used [-Wunused-but-set-variable] 7728 | int slicePositionRepeats = 1; //how many times is first position repeated | ^ dcm2niix/nii_dicom_batch.cpp:8022:10: warning: unused variable 'shearMat' [-Wunused-variable] 8022 | mat33 shearMat; | ^~~~~~~~ 7 warnings generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DUSING_R -DmyDisableOpenJPEG -DHAVE_FMEMOPEN -I. -Idcm2niix -Iujpeg -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RNifti/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c dcm2niix/nii_ortho.cpp -o dcm2niix/nii_ortho.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DUSING_R -DmyDisableOpenJPEG -DHAVE_FMEMOPEN -I. -Idcm2niix -Iujpeg -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RNifti/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c ujpeg/ujpeg.cpp -o ujpeg/ujpeg.o clang++-18 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o divest.so main.o dcm2niix/jpg_0XC3.o dcm2niix/nifti1_io_core.o dcm2niix/nii_dicom.o dcm2niix/nii_dicom_batch.o dcm2niix/nii_ortho.o ujpeg/ujpeg.o -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR make[1]: Leaving directory '/tmp/RtmpMAAd7U/R.INSTALL337e286a21b1ce/divest/src' make[1]: Entering directory '/tmp/RtmpMAAd7U/R.INSTALL337e286a21b1ce/divest/src' make[1]: Leaving directory '/tmp/RtmpMAAd7U/R.INSTALL337e286a21b1ce/divest/src' installing to /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/00LOCK-divest/00new/divest/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * creating tarball packaged installation of ‘divest’ as ‘divest_1.0.0_R_x86_64-pc-linux-gnu.tar.gz’ * DONE (divest)