* installing to library ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages’
* installing *source* package ‘divest’ ...
** package ‘divest’ successfully unpacked and MD5 sums checked
** using staged installation
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C++... yes
checking whether clang++-18 -std=gnu++17 accepts -g... yes
checking for clang++-18 -std=gnu++17 option to enable C++11 features... none needed
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for fmemopen... yes
checking for library containing opj_version... -lopenjp2
checking for openjpeg.h... no
checking for library containing jas_getversion... no
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C++ compiler: ‘Debian clang version 18.1.4 (1)’
make[1]: Entering directory '/tmp/RtmpumuNjz/R.INSTALL3977c5ccbc5f3/divest/src'
clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DUSING_R -DmyDisableOpenJPEG -DHAVE_FMEMOPEN -I. -Idcm2niix -Iujpeg -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RNifti/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic  -c main.cpp -o main.o
clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DUSING_R -DmyDisableOpenJPEG -DHAVE_FMEMOPEN -I. -Idcm2niix -Iujpeg -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RNifti/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic  -c dcm2niix/jpg_0XC3.cpp -o dcm2niix/jpg_0XC3.o
clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DUSING_R -DmyDisableOpenJPEG -DHAVE_FMEMOPEN -I. -Idcm2niix -Iujpeg -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RNifti/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic  -c dcm2niix/nifti1_io_core.cpp -o dcm2niix/nifti1_io_core.o
clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DUSING_R -DmyDisableOpenJPEG -DHAVE_FMEMOPEN -I. -Idcm2niix -Iujpeg -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RNifti/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic  -c dcm2niix/nii_dicom.cpp -o dcm2niix/nii_dicom.o
dcm2niix/nii_dicom.cpp:1912:6: warning: variable 'patientPositionNumPhilips' set but not used [-Wunused-but-set-variable]
 1912 |         int patientPositionNumPhilips = 0;
      |             ^
1 warning generated.
clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DUSING_R -DmyDisableOpenJPEG -DHAVE_FMEMOPEN -I. -Idcm2niix -Iujpeg -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RNifti/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic  -c dcm2niix/nii_dicom_batch.cpp -o dcm2niix/nii_dicom_batch.o
dcm2niix/nii_dicom_batch.cpp:2505:7: warning: variable 'isIsotropic' set but not used [-Wunused-but-set-variable]
 2505 |         bool isIsotropic = false;
      |              ^
dcm2niix/nii_dicom_batch.cpp:3268:4: warning: misleading indentation; statement is not part of the previous 'if' [-Wmisleading-indentation]
 3268 |                         fprintf(fp, kDCMdate);
      |                         ^
dcm2niix/nii_dicom_batch.cpp:3266:3: note: previous statement is here
 3266 |                 if (fp != NULL)
      |                 ^
dcm2niix/nii_dicom_batch.cpp:6334:9: warning: unused variable 'pf' [-Wunused-variable]
 6334 |                 float pf = 1.0f; //partial fourier
      |                       ^~
dcm2niix/nii_dicom_batch.cpp:6597:7: warning: variable 'isDirLabel' set but not used [-Wunused-but-set-variable]
 6597 |         bool isDirLabel = false; //report phase encoding direction
      |              ^
dcm2niix/nii_dicom_batch.cpp:6768:6: warning: variable 'nVol' set but not used [-Wunused-but-set-variable]
 6768 |         int nVol = 1;
      |             ^
dcm2niix/nii_dicom_batch.cpp:7728:11: warning: variable 'slicePositionRepeats' set but not used [-Wunused-but-set-variable]
 7728 |                                                 int slicePositionRepeats = 1; //how many times is first position repeated
      |                                                     ^
dcm2niix/nii_dicom_batch.cpp:8022:10: warning: unused variable 'shearMat' [-Wunused-variable]
 8022 |                         mat33 shearMat;
      |                               ^~~~~~~~
7 warnings generated.
clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DUSING_R -DmyDisableOpenJPEG -DHAVE_FMEMOPEN -I. -Idcm2niix -Iujpeg -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RNifti/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic  -c dcm2niix/nii_ortho.cpp -o dcm2niix/nii_ortho.o
clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DUSING_R -DmyDisableOpenJPEG -DHAVE_FMEMOPEN -I. -Idcm2niix -Iujpeg -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RNifti/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic  -c ujpeg/ujpeg.cpp -o ujpeg/ujpeg.o
clang++-18 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o divest.so main.o dcm2niix/jpg_0XC3.o dcm2niix/nifti1_io_core.o dcm2niix/nii_dicom.o dcm2niix/nii_dicom_batch.o dcm2niix/nii_ortho.o ujpeg/ujpeg.o -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpumuNjz/R.INSTALL3977c5ccbc5f3/divest/src'
make[1]: Entering directory '/tmp/RtmpumuNjz/R.INSTALL3977c5ccbc5f3/divest/src'
make[1]: Leaving directory '/tmp/RtmpumuNjz/R.INSTALL3977c5ccbc5f3/divest/src'
installing to /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/00LOCK-divest/00new/divest/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (divest)