* using log directory ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/coxme.Rcheck’
* using R Under development (unstable) (2024-04-29 r86495)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 18.1.4 (1)
    Debian flang-new version 18.1.4 (1)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘coxme/DESCRIPTION’ ... OK
* this is package ‘coxme’ version ‘2.2-20’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘coxme’ can be installed ... OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-debian-clang/coxme-00install.html' for details.
* used C compiler: ‘Debian clang version 18.1.4 (1)’
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [3s/4s] OK
* checking whether the package can be loaded with stated dependencies ... [3s/4s] OK
* checking whether the package can be unloaded cleanly ... [3s/4s] OK
* checking whether the namespace can be loaded with stated dependencies ... [3s/3s] OK
* checking whether the namespace can be unloaded cleanly ... [3s/4s] OK
* checking loading without being on the library search path ... [3s/4s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [31s/39s] OK
* checking Rd files ... [1s/1s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for GNU extensions in Makefiles ... OK
* checking include directives in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [6s/7s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [102s/121s] OK
  Running ‘brfit.R’ [6s/7s]
  Running ‘lmekin1.R’ [5s/7s]
  Comparing ‘lmekin1.Rout’ to ‘lmekin1.Rout.save’ ... OK
  Running ‘lmekin2.R’ [3s/4s]
  Comparing ‘lmekin2.Rout’ to ‘lmekin2.Rout.save’ ... OK
  Running ‘nest1.R’ [3s/4s]
  Comparing ‘nest1.Rout’ to ‘nest1.Rout.save’ ... OK
  Running ‘nest2.R’ [3s/4s]
  Comparing ‘nest2.Rout’ to ‘nest2.Rout.save’ ... OK
  Running ‘refine.R’ [4s/4s]
  Comparing ‘refine.Rout’ to ‘refine.Rout.save’ ... OK
  Running ‘refine1.R’ [4s/4s]
  Comparing ‘refine1.Rout’ to ‘refine1.Rout.save’ ... OK
  Running ‘refine2.R’ [4s/5s]
  Comparing ‘refine2.Rout’ to ‘refine2.Rout.save’ ... OK
  Running ‘refine3.R’ [4s/5s]
  Comparing ‘refine3.Rout’ to ‘refine3.Rout.save’ ... OK
  Running ‘shrink.R’ [3s/4s]
  Comparing ‘shrink.Rout’ to ‘shrink.Rout.save’ ... OK
  Running ‘slope1.R’ [16s/19s]
  Comparing ‘slope1.Rout’ to ‘slope1.Rout.save’ ... OK
  Running ‘slope2.R’ [6s/7s]
  Comparing ‘slope2.Rout’ to ‘slope2.Rout.save’ ... OK
  Running ‘slope3.R’ [5s/6s]
  Comparing ‘slope3.Rout’ to ‘slope3.Rout.save’ ... OK
  Running ‘slope4.R’ [11s/13s]
  Comparing ‘slope4.Rout’ to ‘slope4.Rout.save’ ... OK
  Running ‘strata1.R’ [3s/4s]
  Comparing ‘strata1.Rout’ to ‘strata1.Rout.save’ ... OK
  Running ‘test0.R’ [3s/4s]
  Comparing ‘test0.Rout’ to ‘test0.Rout.save’ ... OK
  Running ‘test1.R’ [3s/3s]
  Comparing ‘test1.Rout’ to ‘test1.Rout.save’ ... OK
  Running ‘test2.R’ [3s/4s]
  Comparing ‘test2.Rout’ to ‘test2.Rout.save’ ... OK
  Running ‘test3.R’ [3s/3s]
  Comparing ‘test3.Rout’ to ‘test3.Rout.save’ ... OK
  Running ‘test4.R’ [3s/4s]
  Comparing ‘test4.Rout’ to ‘test4.Rout.save’ ... OK
  Running ‘twoterm.R’ [4s/4s]
  Comparing ‘twoterm.Rout’ to ‘twoterm.Rout.save’ ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [58s/72s] OK
* checking PDF version of manual ... [6s/8s] OK
* checking HTML version of manual ... [2s/2s] OK
* checking for non-standard things in the check directory ... OK
* DONE
Status: OK