* installing to library ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages’
* installing *source* package ‘bnclassify’ ...
** package ‘bnclassify’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘Debian clang version 18.1.4 (1)’
make[1]: Entering directory '/tmp/Rtmpl1lnt3/R.INSTALL1e24367021717/bnclassify/src'
clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o
clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c anb-operate.cpp -o anb-operate.o
clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c basic-misc.cpp -o basic-misc.o
clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c basic-probs.cpp -o basic-probs.o
clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c bh.cpp -o bh.o
In file included from bh.cpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/graph/adjacency_list.hpp:22:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/scoped_ptr.hpp:13:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/scoped_ptr.hpp:75:31: warning: 'auto_ptr<boost::no_property>' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
75 | explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/graph/adjacency_list.hpp:408:18: note: in instantiation of template class 'boost::scoped_ptr<boost::no_property>' requested here
408 | property_ptr m_property;
| ^
bh.cpp:142:16: note: in instantiation of template class 'boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_name_t, std::basic_string<char>>>, boost::property<boost::edge_weight_t, double>>' requested here
142 | ugraph g = r2graph<ugraph>(vertices, edges);
| ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/backward/auto_ptr.h:291:7: note: 'auto_ptr<boost::no_property>' has been explicitly marked deprecated here
291 | } _GLIBCXX11_DEPRECATED_SUGGEST("std::unique_ptr");
| ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:108:45: note: expanded from macro '_GLIBCXX11_DEPRECATED_SUGGEST'
108 | # define _GLIBCXX11_DEPRECATED_SUGGEST(ALT) _GLIBCXX_DEPRECATED_SUGGEST(ALT)
| ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:100:19: note: expanded from macro '_GLIBCXX_DEPRECATED_SUGGEST'
100 | __attribute__ ((__deprecated__ ("use '" ALT "' instead")))
| ^
bh.cpp:70:12: warning: unused variable 'index' [-Wunused-variable]
70 | IndexMap index = get(vertex_index, original_graph);
| ^~~~~
bh.cpp:198:10: note: in instantiation of function template specialization 'graph2R<boost::filtered_graph<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_name_t, std::basic_string<char>>>, boost::property<boost::edge_index_t, int, boost::property<boost::edge_weight_t, double>>>, boost::keep_all, remove_names<boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_name_t, std::basic_string<char>>>, boost::property<boost::edge_index_t, int, boost::property<boost::edge_weight_t, double>>>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_name_t, std::basic_string<char>>>, boost::property<boost::edge_index_t, int, boost::property<boost::edge_weight_t, double>>> *, std::basic_string<char>, std::basic_string<char> &, boost::vertex_name_t>>>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_name_t, std::basic_string<char>>>, boost::property<boost::edge_index_t, int, boost::property<boost::edge_weight_t, double>>>>' requested here
198 | return graph2R(fg, g);
| ^
bh.cpp:70:12: warning: unused variable 'index' [-Wunused-variable]
70 | IndexMap index = get(vertex_index, original_graph);
| ^~~~~
bh.cpp:216:10: note: in instantiation of function template specialization 'graph2R<boost::filtered_graph<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_name_t, std::basic_string<char>>>, boost::property<boost::edge_weight_t, double>>, remove_edge_names<boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_name_t, std::basic_string<char>>>, boost::property<boost::edge_weight_t, double>>, boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_name_t, std::basic_string<char>>>, boost::property<boost::edge_weight_t, double>> *, std::basic_string<char>, std::basic_string<char> &, boost::vertex_name_t>, boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_name_t, std::basic_string<char>>>, boost::property<boost::edge_weight_t, double>>>>, boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_name_t, std::basic_string<char>>>, boost::property<boost::edge_weight_t, double>>>' requested here
216 | return graph2R(fg, g);
| ^
bh.cpp:70:12: warning: unused variable 'index' [-Wunused-variable]
70 | IndexMap index = get(vertex_index, original_graph);
| ^~~~~
bh.cpp:272:10: note: in instantiation of function template specialization 'graph2R<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_name_t, std::basic_string<char>>>, boost::property<boost::edge_weight_t, double>>, boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_name_t, std::basic_string<char>>>, boost::property<boost::edge_weight_t, double>>>' requested here
272 | return graph2R(krusk, krusk);
| ^
4 warnings generated.
clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c data.cpp -o data.o
clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c graph-internal.cpp -o graph-internal.o
clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c infer-test-wrappers.cpp -o infer-test-wrappers.o
clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c infer.cpp -o infer.o
In file included from infer.cpp:1:
../inst/include/infer.h:114:15: warning: private field 'cpt' is not used [-Wunused-private-field]
114 | const CPT & cpt;
| ^
1 warning generated.
clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c multidim-array.cpp -o multidim-array.o
clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c table.cpp -o table.o
clang++-18 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o bnclassify.so RcppExports.o anb-operate.o basic-misc.o basic-probs.o bh.o data.o graph-internal.o infer-test-wrappers.o infer.o multidim-array.o table.o -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/tmp/Rtmpl1lnt3/R.INSTALL1e24367021717/bnclassify/src'
make[1]: Entering directory '/tmp/Rtmpl1lnt3/R.INSTALL1e24367021717/bnclassify/src'
make[1]: Leaving directory '/tmp/Rtmpl1lnt3/R.INSTALL1e24367021717/bnclassify/src'
installing to /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/00LOCK-bnclassify/00new/bnclassify/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (bnclassify)