* installing to library ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages’ * installing *source* package ‘bayesSurv’ ... ** package ‘bayesSurv’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Debian clang version 18.1.4 (1)’ make[1]: Entering directory '/tmp/Rtmp48HyTq/R.INSTALLf2285b895983/bayesSurv/src' clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c 00bayesSurv_init.cpp -o 00bayesSurv_init.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c AK_BLAS_LAPACK.cpp -o AK_BLAS_LAPACK.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c ARS2.cpp -o ARS2.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c GMRF.cpp -o GMRF.o GMRF.cpp:705:17: warning: variable 'nx_nc' set but not used [-Wunused-but-set-variable] 705 | static int j, nx_nc, info; | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c GMRF_Gspline.cpp -o GMRF_Gspline.o GMRF_Gspline.cpp:876:11: warning: variable 'iterTotal' set but not used [-Wunused-but-set-variable] 876 | int iterTotal = nullthIter*nthin; | ^ GMRF_Gspline.cpp:877:11: warning: variable 'iterTotalNow' set but not used [-Wunused-but-set-variable] 877 | int iterTotalNow = 0; | ^ GMRF_Gspline.cpp:879:11: warning: variable 'writeAll' set but not used [-Wunused-but-set-variable] 879 | int writeAll = 0; | ^ 3 warnings generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c GMRF_Gspline_Util.cpp -o GMRF_Gspline_Util.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c Gspline.cpp -o Gspline.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c Gspline_update_Intcpt.cpp -o Gspline_update_Intcpt.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c Gspline_update_Scale.cpp -o Gspline_update_Scale.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c Gspline_update_a.cpp -o Gspline_update_a.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c Gspline_update_gamma.cpp -o Gspline_update_gamma.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c Gspline_update_lambda.cpp -o Gspline_update_lambda.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c Gspline_update_sigma.cpp -o Gspline_update_sigma.o Gspline_update_sigma.cpp:22:49: warning: variable 'itmp' set but not used [-Wunused-but-set-variable] 22 | static int j, j_, iter_nr, err_nr, overrelax, itmp; | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c List.cpp -o List.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c MHblocks.cpp -o MHblocks.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c MHproposal.cpp -o MHproposal.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c Mvtdist3.cpp -o Mvtdist3.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c Slice_sampler2.cpp -o Slice_sampler2.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c arms.cpp -o arms.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c arrays2Mat.cpp -o arrays2Mat.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c bayesBisurvreg.cpp -o bayesBisurvreg.o bayesBisurvreg.cpp:114:9: warning: variable 'n1_interval' set but not used [-Wunused-but-set-variable] 114 | int n1_interval = 0; | ^ bayesBisurvreg.cpp:134:9: warning: variable 'n2_interval' set but not used [-Wunused-but-set-variable] 134 | int n2_interval = 0; | ^ bayesBisurvreg.cpp:135:9: warning: variable 'n2_censored' set but not used [-Wunused-but-set-variable] 135 | int n2_censored = 0; | ^ bayesBisurvreg.cpp:366:9: warning: variable 'iterTotal' set but not used [-Wunused-but-set-variable] 366 | int iterTotal = nullthIter*nthin; | ^ 4 warnings generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c bayesDensity.cpp -o bayesDensity.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c bayesGspline.cpp -o bayesGspline.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c bayesHistogram.cpp -o bayesHistogram.o bayesHistogram.cpp:68:9: warning: variable 'n_interval' set but not used [-Wunused-but-set-variable] 68 | int n_interval = 0; | ^ bayesHistogram.cpp:184:9: warning: variable 'iterTotal' set but not used [-Wunused-but-set-variable] 184 | int iterTotal = nullthIter*nthin; | ^ 2 warnings generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c bayessurvreg1.cpp -o bayessurvreg1.o bayessurvreg1.cpp:527:12: warning: variable 'ru' set but not used [-Wunused-but-set-variable] 527 | void (*ru) (double*, const double*); | ^ bayessurvreg1.cpp:616:9: warning: variable 'iterTotal' set but not used [-Wunused-but-set-variable] 616 | int iterTotal = nullthIter*nthin; | ^ 2 warnings generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c bayessurvreg2.cpp -o bayessurvreg2.o bayessurvreg2.cpp:338:9: warning: variable 'n1_interval' set but not used [-Wunused-but-set-variable] 338 | int n1_interval = 0; | ^ bayessurvreg2.cpp:358:9: warning: variable 'n2_interval' set but not used [-Wunused-but-set-variable] 358 | int n2_interval = 0; | ^ bayessurvreg2.cpp:359:9: warning: variable 'n2_censored' set but not used [-Wunused-but-set-variable] 359 | int n2_censored = 0; | ^ bayessurvreg2.cpp:381:16: warning: unused variable 'RandomIntcpt1' [-Wunused-variable] 381 | const int *RandomIntcpt1 = priorBeta1I + 3; /** indication of random intercept in model **/ | ^~~~~~~~~~~~~ bayessurvreg2.cpp:382:16: warning: unused variable 'RandomIntcpt2' [-Wunused-variable] 382 | const int *RandomIntcpt2 = priorBeta2I + 3; /** introduced on 26/11/2008 **/ | ^~~~~~~~~~~~~ bayessurvreg2.cpp:937:9: warning: variable 'iterTotal' set but not used [-Wunused-but-set-variable] 937 | int iterTotal = nullthIter*nthin; | ^ 6 warnings generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c bblocks.cpp -o bblocks.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c birthDeath.cpp -o birthDeath.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c checkImputeData.cpp -o checkImputeData.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c cholesky.cpp -o cholesky.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c classBetaGamma.cpp -o classBetaGamma.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c classBetaGammaExtend.cpp -o classBetaGammaExtend.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c classCovMatrix.cpp -o classCovMatrix.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c classCovMatrixExtend.cpp -o classCovMatrixExtend.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c classRandomEff.cpp -o classRandomEff.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c classRandomEff_rhoNorm.cpp -o classRandomEff_rhoNorm.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c covMatrix.cpp -o covMatrix.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c in_output.cpp -o in_output.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c in_output_GS.cpp -o in_output_GS.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c logLikelihood.cpp -o logLikelihood.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c marginal_bayesGspline.cpp -o marginal_bayesGspline.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c miscellaneous.cpp -o miscellaneous.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c miscellaneous_GS.cpp -o miscellaneous_GS.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c mixMoments.cpp -o mixMoments.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c moodyRing.cpp -o moodyRing.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c mvtdist.cpp -o mvtdist.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c newton_raphson.cpp -o newton_raphson.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c openFile.cpp -o openFile.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c predictMisc.cpp -o predictMisc.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c predictive.cpp -o predictive.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c predictive_GS.cpp -o predictive_GS.o predictive_GS.cpp:171:9: warning: variable 'sum_ngrid' set but not used [-Wunused-but-set-variable] 171 | int sum_ngrid = 0; | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c printArray.cpp -o printArray.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c propVector.cpp -o propVector.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c qrdecomp.cpp -o qrdecomp.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c quantile.cpp -o quantile.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c random.cpp -o random.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c randomLogLikelihood.cpp -o randomLogLikelihood.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c regresResidual_GS.cpp -o regresResidual_GS.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rhoNorm.cpp -o rhoNorm.o rhoNorm.cpp:459:11: warning: variable 'iterTotal' set but not used [-Wunused-but-set-variable] 459 | int iterTotal = nullthIter*nthin; | ^ rhoNorm.cpp:460:11: warning: variable 'iterTotalNow' set but not used [-Wunused-but-set-variable] 460 | int iterTotalNow = 0; | ^ rhoNorm.cpp:462:11: warning: variable 'writeAll' set but not used [-Wunused-but-set-variable] 462 | int writeAll = 0; | ^ 3 warnings generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c sampledKendallTau.cpp -o sampledKendallTau.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c splitCombine.cpp -o splitCombine.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c structRandomEff32.cpp -o structRandomEff32.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c templatefun.cpp -o templatefun.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c templatefun_GS.cpp -o templatefun_GS.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c updateAlloc.cpp -o updateAlloc.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c updateCovMatRandom.cpp -o updateCovMatRandom.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c updateData.cpp -o updateData.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c updateEta.cpp -o updateEta.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c updateMeans.cpp -o updateMeans.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c updateRandom.cpp -o updateRandom.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c updateRegres.cpp -o updateRegres.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c updateVars.cpp -o updateVars.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c updateWeights.cpp -o updateWeights.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c update_Alloc_GS.cpp -o update_Alloc_GS.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c update_Data_GS.cpp -o update_Data_GS.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c update_sens_spec_misclassification.cpp -o update_sens_spec_misclassification.o clang++-18 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o bayesSurv.so 00bayesSurv_init.o AK_BLAS_LAPACK.o ARS2.o GMRF.o GMRF_Gspline.o GMRF_Gspline_Util.o Gspline.o Gspline_update_Intcpt.o Gspline_update_Scale.o Gspline_update_a.o Gspline_update_gamma.o Gspline_update_lambda.o Gspline_update_sigma.o List.o MHblocks.o MHproposal.o Mvtdist3.o Slice_sampler2.o arms.o arrays2Mat.o bayesBisurvreg.o bayesDensity.o bayesGspline.o bayesHistogram.o bayessurvreg1.o bayessurvreg2.o bblocks.o birthDeath.o checkImputeData.o cholesky.o classBetaGamma.o classBetaGammaExtend.o classCovMatrix.o classCovMatrixExtend.o classRandomEff.o classRandomEff_rhoNorm.o covMatrix.o in_output.o in_output_GS.o logLikelihood.o marginal_bayesGspline.o miscellaneous.o miscellaneous_GS.o mixMoments.o moodyRing.o mvtdist.o newton_raphson.o openFile.o predictMisc.o predictive.o predictive_GS.o printArray.o propVector.o qrdecomp.o quantile.o random.o randomLogLikelihood.o regresResidual_GS.o rhoNorm.o sampledKendallTau.o splitCombine.o structRandomEff32.o templatefun.o templatefun_GS.o updateAlloc.o updateCovMatRandom.o updateData.o updateEta.o updateMeans.o updateRandom.o updateRegres.o updateVars.o updateWeights.o update_Alloc_GS.o update_Data_GS.o update_sens_spec_misclassification.o -llapack -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lRblas -L/usr/lib/llvm-18/lib -lFortran_main -lFortranRuntime -lFortranDecimal -lm -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR make[1]: Leaving directory '/tmp/Rtmp48HyTq/R.INSTALLf2285b895983/bayesSurv/src' make[1]: Entering directory '/tmp/Rtmp48HyTq/R.INSTALLf2285b895983/bayesSurv/src' make[1]: Leaving directory '/tmp/Rtmp48HyTq/R.INSTALLf2285b895983/bayesSurv/src' installing to /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/00LOCK-bayesSurv/00new/bayesSurv/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * creating tarball packaged installation of ‘bayesSurv’ as ‘bayesSurv_3.7_R_x86_64-pc-linux-gnu.tar.gz’ * DONE (bayesSurv)