* installing to library ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages’ * installing *source* package ‘TreeDist’ ... ** package ‘TreeDist’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Debian clang version 18.1.4 (1)’ using C++17 make[1]: Entering directory '/tmp/RtmpVjXKYx/R.INSTALL75b3a7425e210/TreeDist/src' clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TreeTools/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TreeTools/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c day_1985.cpp -o day_1985.o In file included from day_1985.cpp:4: In file included from ./tree_distances.h:9: ./ints.h:11:21: warning: extension used [-Wlanguage-extension-token] 11 | typedef std::vector grf_match; | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TreeTools/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c lap.cpp -o lap.o In file included from lap.cpp:27: In file included from ./tree_distances.h:9: ./ints.h:11:21: warning: extension used [-Wlanguage-extension-token] 11 | typedef std::vector grf_match; | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TreeTools/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c mast.cpp -o mast.o In file included from mast.cpp:3: ./ints.h:11:21: warning: extension used [-Wlanguage-extension-token] 11 | typedef std::vector grf_match; | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TreeTools/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c nni_distance.cpp -o nni_distance.o In file included from nni_distance.cpp:6: In file included from ./tree_distances.h:9: ./ints.h:11:21: warning: extension used [-Wlanguage-extension-token] 11 | typedef std::vector grf_match; | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TreeTools/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c tree_distance_functions.cpp -o tree_distance_functions.o In file included from tree_distance_functions.cpp:6: In file included from ./tree_distances.h:9: ./ints.h:11:21: warning: extension used [-Wlanguage-extension-token] 11 | typedef std::vector grf_match; | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TreeTools/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c tree_distances.cpp -o tree_distances.o In file included from tree_distances.cpp:5: In file included from ./tree_distances.h:9: ./ints.h:11:21: warning: extension used [-Wlanguage-extension-token] 11 | typedef std::vector grf_match; | ^ 1 warning generated. clang++-18 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o TreeDist.so RcppExports.o day_1985.o lap.o mast.o nni_distance.o tree_distance_functions.o tree_distances.o -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR make[1]: Leaving directory '/tmp/RtmpVjXKYx/R.INSTALL75b3a7425e210/TreeDist/src' make[1]: Entering directory '/tmp/RtmpVjXKYx/R.INSTALL75b3a7425e210/TreeDist/src' make[1]: Leaving directory '/tmp/RtmpVjXKYx/R.INSTALL75b3a7425e210/TreeDist/src' installing to /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/00LOCK-TreeDist/00new/TreeDist/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * creating tarball packaged installation of ‘TreeDist’ as ‘TreeDist_2.7.0_R_x86_64-pc-linux-gnu.tar.gz’ * DONE (TreeDist)