* installing to library ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages’ * installing *source* package ‘RMCC’ ... ** package ‘RMCC’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Debian clang version 18.1.4 (1)’ using C++11 make[1]: Entering directory '/tmp/RtmptJ3Nes/R.INSTALL806715233905b/RMCC/src' clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c Algorithm.cpp -o Algorithm.o In file included from Algorithm.cpp:26: In file included from ./IUnclassifiedPoints.h:18: In file included from ./IPointVector.h:19: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/iterator.hpp:10:1: warning: This header is deprecated. Use instead. [-W#pragma-messages] 10 | BOOST_HEADER_DEPRECATED("") | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/config/header_deprecated.hpp:23:37: note: expanded from macro 'BOOST_HEADER_DEPRECATED' 23 | # define BOOST_HEADER_DEPRECATED(a) BOOST_PRAGMA_MESSAGE("This header is deprecated. Use " a " instead.") | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/config/pragma_message.hpp:24:34: note: expanded from macro 'BOOST_PRAGMA_MESSAGE' 24 | # define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x))) | ^ :2:2: note: expanded from here 2 | message("This header is deprecated. Use " "" " instead.") | ^ In file included from Algorithm.cpp:21: ./Algorithm.h:37:12: warning: private field 'writeNongroundPts_' is not used [-Wunused-private-field] 37 | bool writeNongroundPts_; | ^ ./Algorithm.h:38:12: warning: private field 'writeRasterSurfaces_' is not used [-Wunused-private-field] 38 | bool writeRasterSurfaces_; | ^ 3 warnings generated. clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c CoordinateInterval.cpp -o CoordinateInterval.o clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c DisjointRegions.cpp -o DisjointRegions.o In file included from DisjointRegions.cpp:24: In file included from ./IPointVector.h:19: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/iterator.hpp:10:1: warning: This header is deprecated. Use instead. [-W#pragma-messages] 10 | BOOST_HEADER_DEPRECATED("") | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/config/header_deprecated.hpp:23:37: note: expanded from macro 'BOOST_HEADER_DEPRECATED' 23 | # define BOOST_HEADER_DEPRECATED(a) BOOST_PRAGMA_MESSAGE("This header is deprecated. Use " a " instead.") | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/config/pragma_message.hpp:24:34: note: expanded from macro 'BOOST_PRAGMA_MESSAGE' 24 | # define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x))) | ^ :160:2: note: expanded from here 160 | message("This header is deprecated. Use " "" " instead.") | ^ 1 warning generated. clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c DuplicatePoints.cpp -o DuplicatePoints.o clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c Geometry3D.cpp -o Geometry3D.o clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c GridBase.cpp -o GridBase.o clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c InterpolationRegion.cpp -o InterpolationRegion.o clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c LocaleUtilities.cpp -o LocaleUtilities.o clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c PointVector.cpp -o PointVector.o In file included from PointVector.cpp:17: In file included from ./PointVector.h:22: In file included from ./IPointVector.h:19: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/iterator.hpp:10:1: warning: This header is deprecated. Use instead. [-W#pragma-messages] 10 | BOOST_HEADER_DEPRECATED("") | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/config/header_deprecated.hpp:23:37: note: expanded from macro 'BOOST_HEADER_DEPRECATED' 23 | # define BOOST_HEADER_DEPRECATED(a) BOOST_PRAGMA_MESSAGE("This header is deprecated. Use " a " instead.") | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/config/pragma_message.hpp:24:34: note: expanded from macro 'BOOST_PRAGMA_MESSAGE' 24 | # define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x))) | ^ :276:2: note: expanded from here 276 | message("This header is deprecated. Use " "" " instead.") | ^ 1 warning generated. clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c R_MCC.cpp -o R_MCC.o In file included from R_MCC.cpp:5: In file included from ./PointVector.h:22: In file included from ./IPointVector.h:19: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/iterator.hpp:10:1: warning: This header is deprecated. Use instead. [-W#pragma-messages] 10 | BOOST_HEADER_DEPRECATED("") | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/config/header_deprecated.hpp:23:37: note: expanded from macro 'BOOST_HEADER_DEPRECATED' 23 | # define BOOST_HEADER_DEPRECATED(a) BOOST_PRAGMA_MESSAGE("This header is deprecated. Use " a " instead.") | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/config/pragma_message.hpp:24:34: note: expanded from macro 'BOOST_PRAGMA_MESSAGE' 24 | # define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x))) | ^ :446:2: note: expanded from here 446 | message("This header is deprecated. Use " "" " instead.") | ^ 1 warning generated. clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c RasterSurface.cpp -o RasterSurface.o clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c RcppExports.cpp -o RcppExports.o clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c RegularizedSpline.cpp -o RegularizedSpline.o clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c StackedPoints.cpp -o StackedPoints.o In file included from StackedPoints.cpp:19: In file included from ./IUnclassifiedPoints.h:18: In file included from ./IPointVector.h:19: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/iterator.hpp:10:1: warning: This header is deprecated. Use instead. [-W#pragma-messages] 10 | BOOST_HEADER_DEPRECATED("") | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/config/header_deprecated.hpp:23:37: note: expanded from macro 'BOOST_HEADER_DEPRECATED' 23 | # define BOOST_HEADER_DEPRECATED(a) BOOST_PRAGMA_MESSAGE("This header is deprecated. Use " a " instead.") | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/config/pragma_message.hpp:24:34: note: expanded from macro 'BOOST_PRAGMA_MESSAGE' 24 | # define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x))) | ^ :308:2: note: expanded from here 308 | message("This header is deprecated. Use " "" " instead.") | ^ 1 warning generated. clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c SurfaceInterpolation.cpp -o SurfaceInterpolation.o In file included from SurfaceInterpolation.cpp:21: In file included from ./IPointVector.h:19: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/iterator.hpp:10:1: warning: This header is deprecated. Use instead. [-W#pragma-messages] 10 | BOOST_HEADER_DEPRECATED("") | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/config/header_deprecated.hpp:23:37: note: expanded from macro 'BOOST_HEADER_DEPRECATED' 23 | # define BOOST_HEADER_DEPRECATED(a) BOOST_PRAGMA_MESSAGE("This header is deprecated. Use " a " instead.") | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/config/pragma_message.hpp:24:34: note: expanded from macro 'BOOST_PRAGMA_MESSAGE' 24 | # define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x))) | ^ :160:2: note: expanded from here 160 | message("This header is deprecated. Use " "" " instead.") | ^ SurfaceInterpolation.cpp:109:9: warning: variable 'nSplinesComputed' set but not used [-Wunused-but-set-variable] 109 | int nSplinesComputed = 0; | ^ 2 warnings generated. clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c UnclassifiedPoints.cpp -o UnclassifiedPoints.o In file included from UnclassifiedPoints.cpp:19: In file included from ./UnclassifiedPoints.h:20: In file included from ./IUnclassifiedPoints.h:18: In file included from ./IPointVector.h:19: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/iterator.hpp:10:1: warning: This header is deprecated. Use instead. [-W#pragma-messages] 10 | BOOST_HEADER_DEPRECATED("") | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/config/header_deprecated.hpp:23:37: note: expanded from macro 'BOOST_HEADER_DEPRECATED' 23 | # define BOOST_HEADER_DEPRECATED(a) BOOST_PRAGMA_MESSAGE("This header is deprecated. Use " a " instead.") | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/config/pragma_message.hpp:24:34: note: expanded from macro 'BOOST_PRAGMA_MESSAGE' 24 | # define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x))) | ^ :252:2: note: expanded from here 252 | message("This header is deprecated. Use " "" " instead.") | ^ 1 warning generated. clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c tpsdemo/spline.cpp -o tpsdemo/spline.o clang++-18 -std=gnu++11 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o RMCC.so ./Algorithm.o ./CoordinateInterval.o ./DisjointRegions.o ./DuplicatePoints.o ./Geometry3D.o ./GridBase.o ./InterpolationRegion.o ./LocaleUtilities.o ./PointVector.o ./R_MCC.o ./RasterSurface.o ./RcppExports.o ./RegularizedSpline.o ./StackedPoints.o ./SurfaceInterpolation.o ./UnclassifiedPoints.o tpsdemo/spline.o -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR make[1]: Leaving directory '/tmp/RtmptJ3Nes/R.INSTALL806715233905b/RMCC/src' make[1]: Entering directory '/tmp/RtmptJ3Nes/R.INSTALL806715233905b/RMCC/src' make[1]: Leaving directory '/tmp/RtmptJ3Nes/R.INSTALL806715233905b/RMCC/src' installing to /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/00LOCK-RMCC/00new/RMCC/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RMCC)