* using log directory ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RCytoGPS.Rcheck’
* using R Under development (unstable) (2024-04-27 r86487)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 18.1.4 (1)
    Debian flang-new version 18.1.4 (1)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘RCytoGPS/DESCRIPTION’ ... OK
* this is package ‘RCytoGPS’ version ‘1.2.5’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RCytoGPS’ can be installed ... OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-debian-clang/RCytoGPS-00install.html' for details.
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [0s/1s] OK
* checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the package can be unloaded cleanly ... [0s/1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the namespace can be unloaded cleanly ... [0s/1s] OK
* checking loading without being on the library search path ... [0s/1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [7s/10s] OK
* checking Rd files ... [1s/1s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/1s] OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [5s/6s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [45s/54s] OK
  Running ‘test01-chrom.R’ [1s/1s]
  Comparing ‘test01-chrom.Rout’ to ‘test01-chrom.Rout.save’ ... OK
  Running ‘test02-gb.R’ [1s/1s]
  Comparing ‘test02-gb.Rout’ to ‘test02-gb.Rout.save’ ... OK
  Running ‘test03-objects.R’ [41s/49s]
  Comparing ‘test03-objects.Rout’ to ‘test03-objects.Rout.save’ ... OK
  Running ‘test100-read.R’ [1s/2s]
  Comparing ‘test100-read.Rout’ to ‘test100-read.Rout.save’ ...12c12
< Reading 1 file(s) from '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RCytoGPS/Examples/JSONfiles'.
---
> Reading 1 file(s) from 'C:/Users/KRC/Desktop/RForge/thresher/pkg/RCytoGPS.Rcheck/RCytoGPS/Examples/JSONfiles'.
45c45
< Reading 2 file(s) from '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RCytoGPS/Examples/JSONfiles'.
---
> Reading 2 file(s) from 'C:/Users/KRC/Desktop/RForge/thresher/pkg/RCytoGPS.Rcheck/RCytoGPS/Examples/JSONfiles'.
  Running ‘test101-preclean.R’ [0s/1s]
  Comparing ‘test101-preclean.Rout’ to ‘test101-preclean.Rout.save’ ... OK
  Running ‘testclip.R’ [1s/1s]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [72s/89s] OK
* checking PDF version of manual ... [6s/7s] OK
* checking HTML version of manual ... [1s/1s] OK
* checking for non-standard things in the check directory ... OK
* DONE
Status: OK