* installing to library ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages’ * installing *source* package ‘QFASA’ ... ** package ‘QFASA’ successfully unpacked and MD5 sums checked ** using staged installation ** libs make[1]: Entering directory '/tmp/Rtmpc6PcSy/R.INSTALL1e93ad5427b737/QFASA/src' #/home/hornik/tmp/R.check/r-devel-clang/Work/build/bin/Rscript --vanilla -e "TMB::compile('ErrorModelSimpleEquant.cpp','-O0 -g', safebounds=FALSE,safeunload=FALSE)" /home/hornik/tmp/R.check/r-devel-clang/Work/build/bin/Rscript --vanilla -e "TMB::compile('ErrorModelSimpleEquant.cpp',safebounds=FALSE,safeunload=FALSE)" Note: Using Makevars in /home/hornik/.R/Makevars-clang using C++ compiler: ‘Debian clang version 18.1.4 (1)’ make[2]: Entering directory '/tmp/Rtmpc6PcSy/R.INSTALL1e93ad5427b737/QFASA/src' clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TMB/include" -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include" -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_LIB_INIT=R_init_ErrorModelSimpleEquant -DCPPAD_FRAMEWORK -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TMB/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c ErrorModelSimpleEquant.cpp -o ErrorModelSimpleEquant.o In file included from ErrorModelSimpleEquant.cpp:3: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TMB/include/TMB.hpp:96: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from ErrorModelSimpleEquant.cpp:3: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TMB/include/TMB.hpp:96: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/Sparse:29: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/SparseLU:35: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ 3 warnings generated. clang++-18 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o ErrorModelSimpleEquant.so ErrorModelSimpleEquant.o -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR make[2]: Leaving directory '/tmp/Rtmpc6PcSy/R.INSTALL1e93ad5427b737/QFASA/src' make[2]: Entering directory '/tmp/Rtmpc6PcSy/R.INSTALL1e93ad5427b737/QFASA/src' make[2]: Leaving directory '/tmp/Rtmpc6PcSy/R.INSTALL1e93ad5427b737/QFASA/src' [1] 0 #/home/hornik/tmp/R.check/r-devel-clang/Work/build/bin/Rscript --vanilla -e "TMB::compile('CommonDiet.cpp','-O0 -g',safebounds=FALSE,safeunload=FALSE)" /home/hornik/tmp/R.check/r-devel-clang/Work/build/bin/Rscript --vanilla -e "TMB::compile('CommonDiet.cpp',safebounds=FALSE,safeunload=FALSE)" Note: Using Makevars in /home/hornik/.R/Makevars-clang using C++ compiler: ‘Debian clang version 18.1.4 (1)’ make[2]: Entering directory '/tmp/Rtmpc6PcSy/R.INSTALL1e93ad5427b737/QFASA/src' clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TMB/include" -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include" -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_LIB_INIT=R_init_CommonDiet -DCPPAD_FRAMEWORK -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TMB/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c CommonDiet.cpp -o CommonDiet.o In file included from CommonDiet.cpp:7: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TMB/include/TMB.hpp:96: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from CommonDiet.cpp:7: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/TMB/include/TMB.hpp:96: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/Sparse:29: In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/SparseLU:35: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ 3 warnings generated. clang++-18 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o CommonDiet.so CommonDiet.o -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR make[2]: Leaving directory '/tmp/Rtmpc6PcSy/R.INSTALL1e93ad5427b737/QFASA/src' make[2]: Entering directory '/tmp/Rtmpc6PcSy/R.INSTALL1e93ad5427b737/QFASA/src' make[2]: Leaving directory '/tmp/Rtmpc6PcSy/R.INSTALL1e93ad5427b737/QFASA/src' [1] 0 # Comment here preserves the prior tab make[1]: Leaving directory '/tmp/Rtmpc6PcSy/R.INSTALL1e93ad5427b737/QFASA/src' installing to /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/00LOCK-QFASA/00new/QFASA/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (QFASA)