• using R Under development (unstable) (2017-06-25 r72854)
• using platform: x86_64-pc-linux-gnu (64-bit)
• using session charset: UTF-8
• checking for file ‘IPMpack/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘IPMpack’ version ‘2.1’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘IPMpack’ can be installed ... OK
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... NOTE
  Malformed Title field: should not end in a period.
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... NOTE
  'library' or 'require' calls in package code:
    ‘MCMCpack’ ‘mvtnorm’ ‘truncnorm’
    Please use :: or requireNamespace() instead.
    See section 'Suggested packages' in the 'Writing R Extensions' manual.
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  .alteredFit: no visible global function definition for ‘rnorm’
  .createFecObj: no visible global function definition for ‘rnorm’
  .createFecObj: no visible global function definition for ‘rbinom’
  .createGrowthObj: no visible global function definition for ‘rnorm’
  .createGrowthObj: no visible global function definition for ‘lm’
  .createGrowthObj: no visible global function definition for ‘new’
  .createSurvObj: no visible global function definition for ‘rnorm’
  .createSurvObj: no visible global function definition for ‘glm’
  .createSurvObj: no visible binding for global variable ‘binomial’
  .createSurvObj: no visible global function definition for ‘new’
  .deathDataAugment: no visible global function definition for ‘rnorm’
  .deathDataAugment: no visible global function definition for ‘sd’
  .fecPostCensus: no visible global function definition for ‘dnorm’
  .fecPostCensus: no visible global function definition for ‘predict’
  .fecPostCensusInteger: no visible global function definition for
    ‘dpois’
  .fecPostCensusInteger: no visible global function definition for
    ‘predict’
  .fecPostCensusInteger: no visible global function definition for
    ‘dnbinom’
  .fecPreCensus: no visible global function definition for ‘dnorm’
  .fecPreCensus: no visible global function definition for ‘predict’
  .fecPreCensusInteger: no visible global function definition for ‘dpois’
  .fecPreCensusInteger: no visible global function definition for
    ‘predict’
  .fecPreCensusInteger: no visible global function definition for
    ‘dnbinom’
  .fecRaw: no visible global function definition for ‘predict’
  .generateDataDiscrete: no visible global function definition for
    ‘rnorm’
  .generateDataDiscrete: no visible global function definition for
    ‘rbinom’
  .generateDataDiscrete: no visible global function definition for
    ‘quantile’
  .generateDataStoch: no visible global function definition for ‘rnorm’
  .generateDataStoch: no visible global function definition for ‘rbinom’
  .generateDataStoch: no visible global function definition for
    ‘quantile’
  .generateDataStoch: no visible global function definition for ‘runif’
  .getIPMoutput: no visible global function definition for ‘median’
  .getListRegObjects: no visible global function definition for ‘rmvnorm’
  .getListRegObjects: no visible global function definition for ‘vcov’
  .getListRegObjectsFec: no visible global function definition for
    ‘rmvnorm’
  .getListRegObjectsFec: no visible global function definition for ‘vcov’
  .offspringCum: no visible global function definition for ‘pnorm’
  .offspringCum: no visible global function definition for ‘predict’
  .plotResultsStochStruct: no visible global function definition for
    ‘par’
  .plotResultsStochStruct: no visible global function definition for
    ‘plot’
  .plotResultsStochStruct: no visible global function definition for
    ‘abline’
  .plotResultsStochStruct: no visible global function definition for ‘sd’
  .plotResultsStochStruct: no visible global function definition for
    ‘matplot’
  addPdfGrowthPic: no visible global function definition for ‘points’
  diagnosticsPmatrix: no visible global function definition for ‘par’
  diagnosticsPmatrix: no visible global function definition for ‘hist’
  diagnosticsPmatrix: no visible global function definition for ‘axis’
  diagnosticsPmatrix: no visible global function definition for ‘plot’
  diagnosticsPmatrix: no visible global function definition for ‘text’
  diagnosticsPmatrix: no visible global function definition for ‘arrows’
  diagnosticsPmatrix: no visible global function definition for ‘title’
  diagnosticsPmatrix: no visible global function definition for ‘abline’
  diagnosticsPmatrix: no visible global function definition for ‘points’
  diagnosticsPmatrix: no visible global function definition for ‘legend’
  diagnosticsPmatrix: no visible global function definition for
    ‘quantile’
  diagnosticsPmatrix: no visible global function definition for ‘predict’
  diagnosticsPmatrix: no visible global function definition for ‘mtext’
  diagnosticsPmatrix: no visible global function definition for ‘dnorm’
  diagnosticsPmatrix: no visible global function definition for
    ‘dtruncnorm’
  diagnosticsPmatrix: no visible global function definition for ‘dlnorm’
  generateData: no visible global function definition for ‘rnorm’
  generateData: no visible global function definition for ‘rbinom’
  generateData: no visible global function definition for ‘quantile’
  makeCompoundFmatrix: no visible global function definition for ‘new’
  makeCompoundPmatrix: no visible global function definition for ‘new’
  makeDiscreteTrans: no visible global function definition for ‘sd’
  makeDiscreteTrans: no visible global function definition for ‘glm’
  makeDiscreteTrans: no visible binding for global variable ‘binomial’
  makeDiscreteTrans: no visible global function definition for ‘new’
  makeDiscreteTransInteger: no visible global function definition for
    ‘glm’
  makeDiscreteTransInteger: no visible binding for global variable
    ‘binomial’
  makeDiscreteTransInteger: no visible global function definition for
    ‘new’
  makeEnvObj: no visible global function definition for ‘new’
  makeFecObj: no visible global function definition for ‘new’
  makeFecObj: no visible global function definition for ‘glm’
  makeFecObj: no visible global function definition for ‘lm’
  makeFecObjInteger: no visible global function definition for ‘new’
  makeFecObjInteger: no visible global function definition for ‘glm’
  makeGrowthObj: no visible global function definition for ‘lm’
  makeGrowthObj: no visible binding for global variable ‘na.omit’
  makeGrowthObj: no visible global function definition for ‘glm’
  makeGrowthObj: no visible global function definition for ‘new’
  makeIPMFmatrix: no visible global function definition for ‘runif’
  makeIPMFmatrix: no visible global function definition for ‘new’
  makeIPMPmatrix: no visible global function definition for ‘new’
  makeIPMPmatrix: no visible global function definition for ‘predict’
  makeIPMPmatrix: no visible global function definition for ‘dnorm’
  makeIntegerFmatrix: no visible global function definition for ‘runif’
  makeIntegerFmatrix: no visible global function definition for ‘new’
  makeIntegerPmatrix: no visible global function definition for ‘new’
  makeIntegerPmatrix: no visible global function definition for ‘predict’
  makeIntegerPmatrix: no visible global function definition for ‘dpois’
  makeIntegerPmatrix: no visible global function definition for ‘dnbinom’
  makeOffspringObj: no visible global function definition for ‘lm’
  makeOffspringObj: no visible binding for global variable ‘na.omit’
  makeOffspringObj: no visible global function definition for ‘glm’
  makeOffspringObj: no visible global function definition for ‘new’
  makeSurvObj: no visible global function definition for ‘glm’
  makeSurvObj: no visible binding for global variable ‘binomial’
  makeSurvObj: no visible global function definition for ‘new’
  makegrowthObjHossfeld: no visible global function definition for
    ‘optim’
  makegrowthObjHossfeld: no visible global function definition for ‘new’
  makegrowthObjHossfeld: no visible global function definition for ‘sd’
  picGrow: no visible global function definition for ‘plot’
  picGrow: no visible global function definition for ‘abline’
  picGrow: no visible global function definition for ‘points’
  picGrow: no visible global function definition for ‘predict’
  picGrow: no visible global function definition for ‘lines’
  picSurv: no visible global function definition for ‘plot’
  picSurv: no visible global function definition for ‘points’
  picSurv: no visible global function definition for ‘predict’
  plotGrowthModelComp: no visible global function definition for ‘plot’
  plotGrowthModelComp: no visible global function definition for ‘terms’
  plotGrowthModelComp: no visible global function definition for
    ‘predict’
  plotGrowthModelComp: no visible global function definition for ‘lines’
  plotGrowthModelComp: no visible global function definition for ‘legend’
  plotSurvModelComp: no visible global function definition for ‘plot’
  plotSurvModelComp: no visible global function definition for ‘terms’
  plotSurvModelComp: no visible global function definition for ‘lines’
  plotSurvModelComp: no visible global function definition for ‘legend’
  predictFutureDistribution: no visible global function definition for
    ‘plot’
  predictFutureDistribution: no visible global function definition for
    ‘points’
  predictFutureDistribution: no visible global function definition for
    ‘legend’
  sampleIPMOutput: no visible global function definition for ‘median’
  sampleVitalRateObj: no visible global function definition for
    ‘rdirichlet’
  sampleVitalRateObj: no visible global function definition for ‘rmvnorm’
  sampleVitalRateObj: no visible global function definition for ‘vcov’
  sampleVitalRateObj: no visible global function definition for ‘rnorm’
  sampleVitalRateObj: no visible global function definition for
    ‘coefficients’
  simulateCarlina: no visible global function definition for ‘rnorm’
  simulateCarlina: no visible global function definition for ‘rmvnorm’
  simulateCarlina: no visible global function definition for ‘runif’
  simulateCarlina: no visible global function definition for ‘var’
  sizeToAge: no visible global function definition for ‘median’
  timeToSize: no visible global function definition for ‘par’
  timeToSize: no visible global function definition for ‘plot’
  timeToSize: no visible global function definition for ‘points’
  timeToSize: no visible global function definition for ‘legend’
  timeToSize: no visible global function definition for ‘abline’
  timeToSize: no visible global function definition for ‘contour’
  growth,numeric-numeric-data.frame-growthObj: no visible global function
    definition for ‘predict’
  growth,numeric-numeric-data.frame-growthObj: no visible global function
    definition for ‘dnorm’
  growth,numeric-numeric-data.frame-growthObjDeclineVar: no visible
    global function definition for ‘dnorm’
  growth,numeric-numeric-data.frame-growthObjHossfeld: no visible global
    function definition for ‘dnorm’
  growth,numeric-numeric-data.frame-growthObjIncr: no visible global
    function definition for ‘predict’
  growth,numeric-numeric-data.frame-growthObjIncr: no visible global
    function definition for ‘dnorm’
  growth,numeric-numeric-data.frame-growthObjIncrDeclineVar: no visible
    global function definition for ‘dnorm’
  growth,numeric-numeric-data.frame-growthObjLogIncr: no visible global
    function definition for ‘predict’
  growth,numeric-numeric-data.frame-growthObjLogIncr: no visible global
    function definition for ‘dlnorm’
  growth,numeric-numeric-data.frame-growthObjLogIncrDeclineVar: no
    visible global function definition for ‘dlnorm’
  growth,numeric-numeric-data.frame-growthObjNegBin: no visible global
    function definition for ‘predict’
  growth,numeric-numeric-data.frame-growthObjNegBin: no visible global
    function definition for ‘dnbinom’
  growth,numeric-numeric-data.frame-growthObjPois: no visible global
    function definition for ‘predict’
  growth,numeric-numeric-data.frame-growthObjPois: no visible global
    function definition for ‘dpois’
  growth,numeric-numeric-data.frame-growthObjTruncIncr: no visible global
    function definition for ‘dtruncnorm’
  growthCum,numeric-numeric-data.frame-growthObj: no visible global
    function definition for ‘predict’
  growthCum,numeric-numeric-data.frame-growthObj: no visible global
    function definition for ‘pnorm’
  growthCum,numeric-numeric-data.frame-growthObjDeclineVar: no visible
    global function definition for ‘pnorm’
  growthCum,numeric-numeric-data.frame-growthObjHossfeld: no visible
    global function definition for ‘pnorm’
  growthCum,numeric-numeric-data.frame-growthObjIncr: no visible global
    function definition for ‘predict’
  growthCum,numeric-numeric-data.frame-growthObjIncr: no visible global
    function definition for ‘pnorm’
  growthCum,numeric-numeric-data.frame-growthObjIncrDeclineVar: no
    visible global function definition for ‘pnorm’
  growthCum,numeric-numeric-data.frame-growthObjLogIncr: no visible
    global function definition for ‘predict’
  growthCum,numeric-numeric-data.frame-growthObjLogIncr: no visible
    global function definition for ‘plnorm’
  growthCum,numeric-numeric-data.frame-growthObjLogIncrDeclineVar: no
    visible global function definition for ‘plnorm’
  growthCum,numeric-numeric-data.frame-growthObjTruncIncr: no visible
    global function definition for ‘ptruncnorm’
  surv,numeric-data.frame-survObj: no visible global function definition
    for ‘predict’
  surv,numeric-data.frame-survObjOverDisp: no visible global function
    definition for ‘predict’
  Undefined global functions or variables:
    abline arrows axis binomial coefficients contour dlnorm dnbinom dnorm
    dpois dtruncnorm glm hist legend lines lm matplot median mtext
    na.omit new optim par plnorm plot pnorm points predict ptruncnorm
    quantile rbinom rdirichlet rmvnorm rnorm runif sd terms text title
    var vcov
  Consider adding
    importFrom("graphics", "abline", "arrows", "axis", "contour", "hist",
               "legend", "lines", "matplot", "mtext", "par", "plot",
               "points", "text", "title")
    importFrom("methods", "new")
    importFrom("stats", "binomial", "coefficients", "dlnorm", "dnbinom",
               "dnorm", "dpois", "glm", "lm", "median", "na.omit", "optim",
               "plnorm", "pnorm", "predict", "quantile", "rbinom", "rnorm",
               "runif", "sd", "terms", "var", "vcov")
  to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
  contains 'methods').
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [16s/16s] OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in ‘inst/doc’ ... OK
• checking re-building of vignette outputs ... [5s/5s] OK
• checking PDF version of manual ... OK
• DONE

Status: 3 NOTEs