* installing to library ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages’
* installing *source* package ‘HMMEsolver’ ...
** package ‘HMMEsolver’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘Debian clang version 18.1.4 (1)’
using C++ compiler: ‘Debian clang version 18.1.4 (1)’
using C++11
make[1]: Entering directory '/tmp/RtmpIx1Cnd/R.INSTALL3c3d2f1a8b67a8/HMMEsolver/src'
clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion  -c Dist.cpp -o Dist.o
clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion  -c Dist2.cpp -o Dist2.o
clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion  -c FuncLib.cpp -o FuncLib.o
FuncLib.cpp:34:7: warning: unused variable 'nInd' [-Wunused-variable]
   34 |   int nInd = 0;
      |       ^~~~
FuncLib.cpp:77:7: warning: unused variable 'nInd' [-Wunused-variable]
   77 |   int nInd = 0;
      |       ^~~~
FuncLib.cpp:115:7: warning: unused variable 'nm' [-Wunused-variable]
  115 |   int nm = n*m;
      |       ^~
FuncLib.cpp:128:11: warning: variable 'eta' set but not used [-Wunused-but-set-variable]
  128 |   double* eta = &dummys;
      |           ^
FuncLib.cpp:129:11: warning: variable 'deta_dmu' set but not used [-Wunused-but-set-variable]
  129 |   double* deta_dmu = &dummydet ;
      |           ^
5 warnings generated.
clang-18 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c HMMEsolver_init.c -o HMMEsolver_init.o
clang++-18 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion  -c MainLib.cpp -o MainLib.o
MainLib.cpp:15:8: warning: variable 'Result' set but not used [-Wunused-but-set-variable]
   15 |   bool Result;
      |        ^
1 warning generated.
clang++-18 -std=gnu++11 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o HMMEsolver.so Dist.o Dist2.o FuncLib.o HMMEsolver_init.o MainLib.o -llapack -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lRblas -L/usr/lib/llvm-18/lib -lFortran_main -lFortranRuntime -lFortranDecimal -lm -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpIx1Cnd/R.INSTALL3c3d2f1a8b67a8/HMMEsolver/src'
make[1]: Entering directory '/tmp/RtmpIx1Cnd/R.INSTALL3c3d2f1a8b67a8/HMMEsolver/src'
make[1]: Leaving directory '/tmp/RtmpIx1Cnd/R.INSTALL3c3d2f1a8b67a8/HMMEsolver/src'
installing to /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/00LOCK-HMMEsolver/00new/HMMEsolver/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* creating tarball
packaged installation of ‘HMMEsolver’ as ‘HMMEsolver_0.1.2_R_x86_64-pc-linux-gnu.tar.gz’
* DONE (HMMEsolver)