* installing to library ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages’ * installing *source* package ‘GpGp’ ... ** package ‘GpGp’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Debian clang version 18.1.4 (1)’ make[1]: Entering directory '/tmp/RtmpTCEoXG/R.INSTALL3b6d8d29d8f63e/GpGp/src' clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c matrix_mult.cpp -o matrix_mult.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c vecchia_loglik_grad_info.cpp -o vecchia_loglik_grad_info.o In file included from vecchia_loglik_grad_info.cpp:8: In file included from ./onepass.h:8: In file included from ./covmatrix_funs.h:10: ./covmatrix_funs_02.h:721:12: warning: unused variable 'nugget' [-Wunused-variable] 721 | double nugget = covparms( 0 )*covparms( 7 ); | ^~~~~~ In file included from vecchia_loglik_grad_info.cpp:8: In file included from ./onepass.h:8: In file included from ./covmatrix_funs.h:11: ./covmatrix_funs_03.h:95:12: warning: unused variable 'nugget' [-Wunused-variable] 95 | double nugget = covparms( 0 )*covparms( dim + 2 ); | ^~~~~~ ./covmatrix_funs_03.h:229:12: warning: unused variable 'nugget' [-Wunused-variable] 229 | double nugget = covparms( 0 )*covparms( dim + 1 ); | ^~~~~~ ./covmatrix_funs_03.h:337:12: warning: unused variable 'nugget' [-Wunused-variable] 337 | double nugget = covparms( 0 )*covparms( 4 ); | ^~~~~~ In file included from vecchia_loglik_grad_info.cpp:8: In file included from ./onepass.h:8: In file included from ./covmatrix_funs.h:17: ./covmatrix_funs_09.h:89:12: warning: unused variable 'nugget' [-Wunused-variable] 89 | double nugget = covparms( 0 )*covparms( dim + 1 ); | ^~~~~~ In file included from vecchia_loglik_grad_info.cpp:8: In file included from ./onepass.h:8: In file included from ./covmatrix_funs.h:18: ./covmatrix_funs_10.h:187:12: warning: unused variable 'nugget' [-Wunused-variable] 187 | double nugget = covparms( 0 )*covparms( dim + 1 ); | ^~~~~~ In file included from vecchia_loglik_grad_info.cpp:8: In file included from ./onepass.h:8: In file included from ./covmatrix_funs.h:19: ./covmatrix_funs_11.h:206:12: warning: unused variable 'nugget' [-Wunused-variable] 206 | double nugget = covparms( 0 )*covparms( dim + 1 ); | ^~~~~~ In file included from vecchia_loglik_grad_info.cpp:8: In file included from ./onepass.h:8: In file included from ./covmatrix_funs.h:20: ./covmatrix_funs_12.h:209:12: warning: unused variable 'nugget' [-Wunused-variable] 209 | double nugget = covparms( 0 )*covparms( dim + 1 ); | ^~~~~~ In file included from vecchia_loglik_grad_info.cpp:8: In file included from ./onepass.h:8: In file included from ./covmatrix_funs.h:21: ./covmatrix_funs_13.h:126:12: warning: unused variable 'nugget' [-Wunused-variable] 126 | double nugget = covparms( 0 )*covparms( 4 ); | ^~~~~~ ./covmatrix_funs_13.h:127:9: warning: unused variable 'categ' [-Wunused-variable] 127 | double categ = covparms(0)*covparms(3); | ^~~~~ ./covmatrix_funs_13.h:542:12: warning: unused variable 'nugget' [-Wunused-variable] 542 | double nugget = covparms(0)*covparms(8); | ^~~~~~ In file included from vecchia_loglik_grad_info.cpp:8: ./onepass.h:93:10: warning: variable 'pd' set but not used [-Wunused-but-set-variable] 93 | bool pd = true; | ^ ./onepass.h:700:9: warning: unused variable 'dim' [-Wunused-variable] 700 | int dim = locs.ncol(); | ^~~ 13 warnings generated. clang++-18 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o GpGp.so RcppExports.o matrix_mult.o vecchia_loglik_grad_info.o -llapack -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lRblas -L/usr/lib/llvm-18/lib -lFortran_main -lFortranRuntime -lFortranDecimal -lm -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR make[1]: Leaving directory '/tmp/RtmpTCEoXG/R.INSTALL3b6d8d29d8f63e/GpGp/src' make[1]: Entering directory '/tmp/RtmpTCEoXG/R.INSTALL3b6d8d29d8f63e/GpGp/src' make[1]: Leaving directory '/tmp/RtmpTCEoXG/R.INSTALL3b6d8d29d8f63e/GpGp/src' installing to /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/00LOCK-GpGp/00new/GpGp/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * creating tarball packaged installation of ‘GpGp’ as ‘GpGp_0.5.0_R_x86_64-pc-linux-gnu.tar.gz’ * DONE (GpGp)