• using R Under development (unstable) (2012-02-23 r58468)
• using platform: i686-pc-linux-gnu (32-bit)
• using session charset: UTF-8
• checking for file ‘xpose4specific/DESCRIPTION’ ... OK
• this is package ‘xpose4specific’ version ‘4.3.2’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking whether package ‘xpose4specific’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  File ‘xpose4specific/R/zzz.R’:
  .First.lib calls:
  require(xpose4data)
  require(xpose4generic)
  
  Package startup functions should not change the search path.
  See section ‘Good practice’ in ?.onAttach.
  
  absval.dcwres.vs.cov.model.comp: no visible binding for global variable
  ‘.ref.db’
  absval.dipred.vs.cov.model.comp: no visible binding for global variable
  ‘.ref.db’
  absval.diwres.vs.cov.model.comp: no visible binding for global variable
  ‘.ref.db’
  absval.dpred.vs.cov.model.comp: no visible binding for global variable
  ‘.ref.db’
  absval.dwres.vs.cov.model.comp: no visible binding for global variable
  ‘.ref.db’
  add.model.comp: no visible binding for global variable ‘.ref.db’
  add.model.comp.cwres: no visible binding for global variable ‘.ref.db’
  basic.model.comp: no visible binding for global variable ‘.ref.db’
  basic.model.comp.cwres: no visible binding for global variable
  ‘.ref.db’
  cat.dv.vs.idv.sb: no visible binding for global variable ‘levs’
  check.gamobj : getit: warning in exists(gobjname, w = 1): partial
  argument match of 'w' to 'where'
  check.gamobj: warning in exists("current.gam", w = 1): partial argument
  match of 'w' to 'where'
  check.gamobj: no visible binding for global variable ‘current.gam’
  ind.plots: no visible binding for global variable ‘bin’
  ind.plots: warning in xpose.plot.default(x.vals, "values", nobj, by =
  id.vals, group = "ind", iplot = TRUE, layout = layout, main =
  plotTitle, inclZeroWRES = TRUE, xlb = xlb, ylb = ylb, lty = lty, col
  = col, cex = cex, grid = grid, pch = pch, type = type, lwd = lwd,
  fill = fill, force.by.factor = TRUE, ids = F, as.table = TRUE, key =
  key, subset = subset, main.cex = main.cex, force.x.continuous = TRUE,
  ...): partial argument match of 'group' to 'groups'
  ind.plots.cwres.hist: no visible binding for global variable ‘bin’
  ind.plots.cwres.qq: no visible binding for global variable ‘bin’
  ind.plots.wres.hist: no visible binding for global variable ‘bin’
  ind.plots.wres.qq: no visible binding for global variable ‘bin’
  kaplan.plot: no visible binding for global variable ‘d’
  npc.coverage : myPanel: no visible binding for global variable
  ‘outside.PI’
  parm.summary: warning in viewport(x = 0, y = 1, just = c("left",
  "top"), w = 1, h = 0.9, gp = gpar(cex = 0.9), name = "vp1"): partial
  argument match of 'w' to 'width'
  parm.summary: warning in viewport(x = 0, y = 1, just = c("left",
  "top"), w = 1, h = 0.9, gp = gpar(cex = 0.9), name = "vp1"): partial
  argument match of 'h' to 'height'
  runsum: warning in viewport(x = 0, y = 1, just = c("left", "top"), w =
  1, h = title.size, name = "title.vp"): partial argument match of 'w'
  to 'width'
  runsum: warning in viewport(x = 0, y = 1, just = c("left", "top"), w =
  1, h = title.size, name = "title.vp"): partial argument match of 'h'
  to 'height'
  runsum: warning in viewport(x = 0, y = 1 - title.size, just = c("left",
  "top"), w = 0.25, h = graph.size, name = "graph.1.vp"): partial
  argument match of 'w' to 'width'
  runsum: warning in viewport(x = 0, y = 1 - title.size, just = c("left",
  "top"), w = 0.25, h = graph.size, name = "graph.1.vp"): partial
  argument match of 'h' to 'height'
  runsum: warning in viewport(x = 0.25, y = 1 - title.size, just =
  c("left", "top"), w = 0.25, h = graph.size, name = "graph.2.vp"):
  partial argument match of 'w' to 'width'
  runsum: warning in viewport(x = 0.25, y = 1 - title.size, just =
  c("left", "top"), w = 0.25, h = graph.size, name = "graph.2.vp"):
  partial argument match of 'h' to 'height'
  runsum: warning in viewport(x = 0.5, y = 1 - title.size, just =
  c("left", "top"), w = 0.25, h = graph.size, name = "graph.3.vp"):
  partial argument match of 'w' to 'width'
  runsum: warning in viewport(x = 0.5, y = 1 - title.size, just =
  c("left", "top"), w = 0.25, h = graph.size, name = "graph.3.vp"):
  partial argument match of 'h' to 'height'
  runsum: warning in viewport(x = 0.75, y = 1 - title.size, just =
  c("left", "top"), w = 0.25, h = graph.size, name = "graph.4.vp"):
  partial argument match of 'w' to 'width'
  runsum: warning in viewport(x = 0.75, y = 1 - title.size, just =
  c("left", "top"), w = 0.25, h = graph.size, name = "graph.4.vp"):
  partial argument match of 'h' to 'height'
  runsum: warning in viewport(x = 0, y = 1 - title.size - graph.size,
  just = c("left", "top"), w = 1, h = graph2.size, name =
  "graph.5.vp"): partial argument match of 'w' to 'width'
  runsum: warning in viewport(x = 0, y = 1 - title.size - graph.size,
  just = c("left", "top"), w = 1, h = graph2.size, name =
  "graph.5.vp"): partial argument match of 'h' to 'height'
  runsum: warning in viewport(x = x.val, y = text.size, just = c("left",
  "top"), w = w.val, h = text.size, gp = gpar(lineheight = 1, cex =
  txt.cex, font = txt.font), name = paste("text", col.num, "vp", sep =
  ".")): partial argument match of 'w' to 'width'
  runsum: warning in viewport(x = x.val, y = text.size, just = c("left",
  "top"), w = w.val, h = text.size, gp = gpar(lineheight = 1, cex =
  txt.cex, font = txt.font), name = paste("text", col.num, "vp", sep =
  ".")): partial argument match of 'h' to 'height'
  runsum: warning in absval.iwres.vs.ipred(object, main = NULL, xlb =
  NULL, ylb = NULL, aspect = "fill", subset = subset, ids = F, cex =
  0.5, lwd = 0.1, scales = list(cex = 0.7, tck = c(0.3), y = list(rot =
  90)), lattice.options = list(layout.widths = lw, layout.heights =
  lh), ...): partial argument match of 'ids' to 'idsdir'
  runsum: no visible binding for global variable ‘seenterm’
  runsum: no visible binding for global variable ‘term’
  runsum: no visible binding for global variable ‘seenobj’
  runsum: no visible binding for global variable ‘ofv’
  runsum: no visible binding for global variable ‘parnam’
  runsum: no visible binding for global variable ‘parval’
  runsum: no visible binding for global variable ‘seenseth’
  runsum: no visible binding for global variable ‘seenseom’
  runsum: no visible binding for global variable ‘seensesi’
  runsum: no visible binding for global variable ‘separval’
  runsum.old: warning in close.screen(all = T): partial argument match of
  'all' to 'all.screens'
  runsum.old: no visible binding for global variable ‘seenterm’
  runsum.old: no visible binding for global variable ‘term’
  runsum.old: no visible binding for global variable ‘seenobj’
  runsum.old: no visible binding for global variable ‘ofv’
  runsum.old: no visible binding for global variable ‘seenseth’
  runsum.old: no visible binding for global variable ‘seenseom’
  runsum.old: no visible binding for global variable ‘seensesi’
  runsum.old: no visible binding for global variable ‘npar’
  runsum.print: warning in postscript(paste("|lpr -P ", printer, sep =
  ""), paper = "a4", horiz = F): partial argument match of 'horiz' to
  'horizontal'
  tabulate.parameters: no visible binding for global variable ‘separval’
  tabulate.parameters: no visible binding for global variable ‘parval’
  tabulate.parameters: no visible binding for global variable ‘parnam’
  xp.akaike.plot: no visible binding for global variable ‘current.gam’
  xp.akaike.plot: no visible global function definition for
  ‘reorder.factor’
  xp.gam: warning in exists(paste("gam.xpose.", pars, ".", object@Runno,
  sep = ""), w = 1): partial argument match of 'w' to 'where'
  xp.gam: warning in exists("current.gam", wh = 1): partial argument
  match of 'wh' to 'where'
  xp.get.disp: warning in quasi(link = identity, var = "mu^2"): partial
  argument match of 'var' to 'variance'
  xp.ind.inf.fit: no visible binding for global variable ‘current.gam’
  xp.ind.inf.terms: no visible binding for global variable ‘current.gam’
  xp.ind.stud.res: no visible binding for global variable ‘current.gam’
  xp.ind.stud.res: no visible global function definition for
  ‘reorder.factor’
  xp.plot: no visible binding for global variable ‘current.gam’
  xp.scope3: no visible binding for global variable ‘covnams’
  xp.summary: no visible binding for global variable ‘current.gam’
  xpose.gam: warning in xp.get.disp(gamdata = gamdata, parnam = parnam,
  covnams = covnams, fam = family): partial argument match of 'fam' to
  'family'
• checking Rd files ... NOTE
  prepare_Rd: cat.dv.vs.idv.sb.Rd:140-141: Dropping empty section \details
  prepare_Rd: cat.dv.vs.idv.sb.Rd:142-143: Dropping empty section \value
  prepare_Rd: cat.dv.vs.idv.sb.Rd:149-150: Dropping empty section \note
  prepare_Rd: cat.dv.vs.idv.sb.Rd:144-145: Dropping empty section \references
  prepare_Rd: cat.dv.vs.idv.sb.Rd:152-153: Dropping empty section \seealso
  prepare_Rd: cat.pc.Rd:76-77: Dropping empty section \details
  prepare_Rd: cat.pc.Rd:78-79: Dropping empty section \value
  prepare_Rd: cat.pc.Rd:85-86: Dropping empty section \note
  prepare_Rd: cat.pc.Rd:80-81: Dropping empty section \references
  prepare_Rd: cat.pc.Rd:88-89: Dropping empty section \seealso
  prepare_Rd: cwres.wres.vs.idv.Rd:76-77: Dropping empty section \note
  prepare_Rd: dOFV.vs.cov.Rd:61-62: Dropping empty section \details
  prepare_Rd: dOFV.vs.cov.Rd:63-64: Dropping empty section \value
  prepare_Rd: dOFV.vs.cov.Rd:70-71: Dropping empty section \note
  prepare_Rd: dOFV.vs.cov.Rd:65-66: Dropping empty section \references
  prepare_Rd: dOFV.vs.cov.Rd:73-74: Dropping empty section \seealso
  prepare_Rd: dOFV.vs.id.Rd:98-99: Dropping empty section \details
  prepare_Rd: dOFV.vs.id.Rd:100-101: Dropping empty section \value
  prepare_Rd: dOFV.vs.id.Rd:107-108: Dropping empty section \note
  prepare_Rd: dOFV.vs.id.Rd:102-103: Dropping empty section \references
  prepare_Rd: dOFV.vs.id.Rd:110-111: Dropping empty section \seealso
  prepare_Rd: dOFV1.vs.dOFV2.Rd:68-69: Dropping empty section \details
  prepare_Rd: dOFV1.vs.dOFV2.Rd:70-71: Dropping empty section \value
  prepare_Rd: dOFV1.vs.dOFV2.Rd:78-79: Dropping empty section \note
  prepare_Rd: dOFV1.vs.dOFV2.Rd:72-74: Dropping empty section \references
  prepare_Rd: dOFV1.vs.dOFV2.Rd:81-82: Dropping empty section \seealso
  prepare_Rd: data.checkout.Rd:77-78: Dropping empty section \note
  prepare_Rd: dist.hist.Rd:75-76: Dropping empty section \note
  prepare_Rd: dist.qq.Rd:76-77: Dropping empty section \note
  prepare_Rd: kaplan.plot.Rd:182-183: Dropping empty section \details
  prepare_Rd: kaplan.plot.Rd:192-193: Dropping empty section \note
  prepare_Rd: kaplan.plot.Rd:187-188: Dropping empty section \references
  prepare_Rd: npc.coverage.Rd:132-133: Dropping empty section \details
  prepare_Rd: npc.coverage.Rd:139-140: Dropping empty section \note
  prepare_Rd: npc.coverage.Rd:137: Dropping empty section \references
  prepare_Rd: runsum.print.Rd:152-153: Dropping empty section \details
  prepare_Rd: runsum.print.Rd:158-159: Dropping empty section \seealso
  prepare_Rd: splom.Rd:102-103: Dropping empty section \note
  prepare_Rd: summary.Rd:82-83: Dropping empty section \details
  prepare_Rd: summary.Rd:95-96: Dropping empty section \note
  prepare_Rd: tabulate.parameters.Rd:41-42: Dropping empty section \details
  prepare_Rd: tabulate.parameters.Rd:47-48: Dropping empty section \note
  prepare_Rd: tabulate.parameters.Rd:49-50: Dropping empty section \seealso
  prepare_Rd: xpose.VPC.Rd:297-298: Dropping empty section \details
  prepare_Rd: xpose.VPC.Rd:304-305: Dropping empty section \note
  prepare_Rd: xpose.VPC.Rd:302: Dropping empty section \references
  prepare_Rd: xpose.VPC.both.Rd:66-67: Dropping empty section \details
  prepare_Rd: xpose.VPC.both.Rd:68-69: Dropping empty section \value
  prepare_Rd: xpose.VPC.both.Rd:75-76: Dropping empty section \note
  prepare_Rd: xpose.VPC.both.Rd:70-71: Dropping empty section \references
  prepare_Rd: xpose.VPC.categorical.Rd:128-129: Dropping empty section \details
  prepare_Rd: xpose.VPC.categorical.Rd:130-131: Dropping empty section \value
  prepare_Rd: xpose.VPC.categorical.Rd:137-138: Dropping empty section \note
  prepare_Rd: xpose.VPC.categorical.Rd:132-133: Dropping empty section \references
  prepare_Rd: xpose.gam.Rd:119-120: Dropping empty section \note
  prepare_Rd: xpose.gam.Rd:117: Dropping empty section \references
  prepare_Rd: xpose.license.citation.Rd:35-36: Dropping empty section \arguments
  prepare_Rd: xpose.license.citation.Rd:37-38: Dropping empty section \details
  prepare_Rd: xpose.license.citation.Rd:43-44: Dropping empty section \note
  prepare_Rd: xpose.license.citation.Rd:45-46: Dropping empty section \seealso
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking examples ... ERROR
  Running examples in ‘xpose4specific-Ex.R’ failed
  The error most likely occurred in:
  
  > ### Name: xpose.license.citation
  > ### Title: Displays the Xpose license and citation information
  > ### Aliases: xpose.license.citation
  > ### Keywords: methods
  >
  > ### ** Examples
  >
  > xpose.license.citation()
  
  This program is free software: you can redistribute it and/or modify
  it under the terms of the GNU Lesser General Public License as published by
  the Free Software Foundation, either version 3 of the License, or
  (at your option) any later version.
  
  This program is distributed in the hope that it will be useful,
  but WITHOUT ANY WARRANTY; without even the implied warranty of
  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
  GNU Lesser General Public License for more details.
  
  A copy of the GNU Lesser General Public License can be found in the R
  installation directory (/home/hornik/tmp/R.check/r-devel/Work/build/share)under licenses.
  If not, see <http://www.gnu.org/licenses/>.
  
  Execution halted