- using R Under development (unstable) (2012-02-23 r58468)
- using platform: i686-pc-linux-gnu (32-bit)
- using session charset: UTF-8
- checking for file ‘wq/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘wq’ version ‘0.3-4’
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking whether package ‘wq’ can be installed ... OK
- checking installed package size ... OK
- checking package directory ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking for unstated dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... NOTE
decompTs: warning in ts(annualmeanReps, s = startyr, f = 12): partial
argument match of 's' to 'start'
decompTs: warning in ts(annualmeanReps, s = startyr, f = 12): partial
argument match of 'f' to 'frequency'
decompTs: warning in ts(rep(monthmean, endyr - startyr + 1), s =
startyr, f = 12): partial argument match of 's' to 'start'
decompTs: warning in ts(rep(monthmean, endyr - startyr + 1), s =
startyr, f = 12): partial argument match of 'f' to 'frequency'
decompTs: warning in ts(as.vector(resids), s = startyr, f = 12):
partial argument match of 's' to 'start'
decompTs: warning in ts(as.vector(resids), s = startyr, f = 12):
partial argument match of 'f' to 'frequency'
eofNum: no visible binding for global variable ‘cumVarLine’
eofPlot: no visible binding for global variable ‘value’
interpTs : replaceNA: warning in ts(x, st = tspx[1], fr = tspx[3]):
partial argument match of 'st' to 'start'
interpTs : replaceNA: warning in ts(x, st = tspx[1], fr = tspx[3]):
partial argument match of 'fr' to 'frequency'
mannKen: no visible binding for global variable ‘variable’
mannKen: no visible binding for global variable ‘sen.slope’
mannKen: no visible binding for global variable ‘sen.slope.pct’
mannKen: no visible binding for global variable ‘tau’
mannKen: no visible binding for global variable ‘p.value’
mannKen: no visible binding for global variable ‘miss’
monthNum: warning in months(y, abbrev = TRUE): partial argument match
of 'abbrev' to 'abbreviate'
plotSeason: no visible binding for global variable ‘yr’
plotSeason: no visible binding for global variable ‘mon’
plotSeason: no visible binding for global variable ‘int’
plotSeason: no visible binding for global variable ‘value’
plotSeason: no visible binding for global variable ‘too.few’
plotSeason: warning in ts(x1, st = start(x)): partial argument match of
'st' to 'start'
plotTs: no visible binding for global variable ‘variable’
plotTs: no visible binding for global variable ‘value’
plotTsAnom: no visible binding for global variable ‘variable’
plotTsAnom: no visible binding for global variable ‘value’
plotTsTile: no visible binding for global variable ‘yr’
plotTsTile: no visible binding for global variable ‘mon’
plotTsTile: no visible binding for global variable ‘value’
seaRoll: no visible binding for global variable ‘sen.slope’
seaRoll: no visible binding for global variable ‘p.value’
seasonTrend: warning in ts(xj[cycle(x1) == i], s = first, end = last):
partial argument match of 's' to 'start'
seasonTrend: no visible binding for global variable ‘season’
seasonTrend: no visible binding for global variable ‘p’
tsSub: warning in ts(x3, start = stx[1], freq = length(seas)): partial
argument match of 'freq' to 'frequency'
wqData: no visible binding for global variable ‘x’
wqData: no visible binding for global variable ‘value’
wqData: no visible binding for global variable ‘site’
wqData: no visible binding for global variable ‘variable’
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... OK
- checking data for ASCII and uncompressed saves ... WARNING
Note: significantly better compression could be obtained
by using R CMD build --resave-data
old_size new_size compress
sfbay.rda 220Kb 122Kb xz
- checking sizes of PDF files under ‘inst/doc’ ... OK
- checking installed files from ‘inst/doc’ ... NOTE
The following files should probably not be installed:
‘limnology_and_oceanography.bst’
Consider the use of a .Rinstignore file: see ‘Writing R Extensions’,
or move the vignette sources from ‘inst/doc’ to ‘vignettes’.
- checking examples ... [54s/54s] OK
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes in ‘inst/doc’ ... OK
- checking running R code from vignettes ... [34s/34s] OK
- checking re-building of vignette PDFs ... [36s/36s] OK
- checking PDF version of manual ... OK
WARNING: There was 1 warning.
NOTE: There were 2 notes.
See
‘/home/hornik/tmp/R.check/r-devel/Work/PKGS/wq.Rcheck/00check.log’
for details.