• using R Under development (unstable) (2012-02-06 r58287)
• using platform: i686-pc-linux-gnu (32-bit)
• using session charset: UTF-8
• checking for file ‘vcd/DESCRIPTION’ ... OK
• this is package ‘vcd’ version ‘1.2-12’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking whether package ‘vcd’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  agreementplot.default: warning in viewport(w = unit(1, "snpc"), h =
  unit(1, "snpc")): partial argument match of 'w' to 'width'
  agreementplot.default: warning in viewport(w = unit(1, "snpc"), h =
  unit(1, "snpc")): partial argument match of 'h' to 'height'
  confint.Kappa: warning in matrix(c(object[[1]][1] - object[[1]][2] * q,
  object[[1]][1] + object[[1]][2] * q, object[[2]][1] - object[[2]][2]
  * q, object[[2]][1] + object[[2]][2] * q), nc = 2, byrow = T,
  dimnames = list(Kappa = c("Unweighted", "Weighted"), c("lwr",
  "upr"))): partial argument match of 'nc' to 'ncol'
  distplot: multiple local function definitions for ‘phi’ with different
  formal arguments
  doubledecker.default: warning in strucplot(x, core =
  struc_mosaic(zero_split = FALSE, zero_shade = FALSE), condvars = l -
  1, spacing = spacing, split = c(rep.int(TRUE, l - 1), FALSE), gp =
  gp, shade = TRUE, labeling = labeling, main = main, margins =
  margins, legend = NULL, keep_aspect_ratio = keep_aspect_ratio, ...):
  partial argument match of 'split' to 'split_vertical'
  fourfold : findTableWithOAM: warning in matrix(c(t - x, x, m - t + x, n
  - x), nr = 2): partial argument match of 'nr' to 'nrow'
  fourfold : stdize: warning in matrix(c(u, 1 - u, 1 - u, u), nr = 2):
  partial argument match of 'nr' to 'nrow'
  pairs_barplot : <anonymous>: warning in grid.rect(xpos - halfstep,
  rep.int(0, length(x)), height = x, just = c("center", "bottom"),
  width = halfstep, gp = gp_bars, default = "native", name =
  paste("panel:diag=", dn[i], "|bars", sep = ""), ...): partial
  argument match of 'default' to 'default.units'
  summary.goodfit: warning in pchisq(RVAL, df = df, lower = FALSE):
  partial argument match of 'lower' to 'lower.tail'
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... NOTE
  The following files should probably not be installed:
  ‘Z.cls’
  
  Consider the use of a .Rinstignore file: see ‘Writing R Extensions’,
  or move the vignette sources from ‘inst/doc’ to ‘vignettes’.
• checking examples ... [48s/48s] OK
• checking for unstated dependencies in tests ... OK
• checking tests ... [20s/20s] OK
  Running ‘demos.R’ [19s/19s]
• checking for unstated dependencies in vignettes ... NOTE
  ‘data(package=)’ call not declared from: ‘coin’
• checking package vignettes in ‘inst/doc’ ... OK
• checking running R code from vignettes ... [23s/23s] WARNING
  Errors in running code in vignettes:
  when running code in ‘residual-shadings.Rnw’
  ...
  
  data: pistonrings
  f(x) = 11.7223, p-value = 0.069
  
  
  > data("alzheimer", package = "coin")
  
  When sourcing ‘residual-shadings.R’:
  Error: there is no package called ‘coin’
  Execution halted
  
• checking re-building of vignette PDFs ... [46s/47s] OK
• checking PDF version of manual ... OK
  WARNING: There was 1 warning.
  NOTE: There were 3 notes.
  See
  ‘/home/hornik/tmp/R.check/r-devel/Work/PKGS/vcd.Rcheck/00check.log’
  for details.