• using R Under development (unstable) (2012-02-06 r58287)
• using platform: i686-pc-linux-gnu (32-bit)
• using session charset: UTF-8
• checking for file ‘superpc/DESCRIPTION’ ... OK
• this is package ‘superpc’ version ‘1.08’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking whether package ‘superpc’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  my.barplot: warning in rgb(r = (0:n)/n, g = 0, b = 0, names =
  paste("red", 0:n, sep = ".")): partial argument match of 'r' to 'red'
  my.barplot: warning in rgb(r = (0:n)/n, g = 0, b = 0, names =
  paste("red", 0:n, sep = ".")): partial argument match of 'g' to
  'green'
  my.barplot: warning in rgb(r = (0:n)/n, g = 0, b = 0, names =
  paste("red", 0:n, sep = ".")): partial argument match of 'b' to
  'blue'
  my.barplot: warning in rgb(g = (0:n)/n, r = 0, b = 0, names =
  paste("green", 0:n, sep = ".")): partial argument match of 'r' to
  'red'
  my.barplot: warning in rgb(g = (0:n)/n, r = 0, b = 0, names =
  paste("green", 0:n, sep = ".")): partial argument match of 'g' to
  'green'
  my.barplot: warning in rgb(g = (0:n)/n, r = 0, b = 0, names =
  paste("green", 0:n, sep = ".")): partial argument match of 'b' to
  'blue'
  my.barplot: warning in rgb(b = (0:n)/n, g = 0, r = 0, names =
  paste("blue", 0:n, sep = ".")): partial argument match of 'r' to
  'red'
  my.barplot: warning in rgb(b = (0:n)/n, g = 0, r = 0, names =
  paste("blue", 0:n, sep = ".")): partial argument match of 'g' to
  'green'
  my.barplot: warning in rgb(b = (0:n)/n, g = 0, r = 0, names =
  paste("blue", 0:n, sep = ".")): partial argument match of 'b' to
  'blue'
  superpc.predictionplot: warning in superpc.predict.red(train.obj, data,
  data.test, threshold = threshold, n.components = n.components,
  shrinkage = shrinkage): partial argument match of 'shrinkage' to
  'shrinkages'
  superpc.predictionplot: warning in layout(matrix(c(1, 2), 1, 2, byrow =
  TRUE), width = c(0.8, 0.2), heights = c(1, 1)): partial argument
  match of 'width' to 'widths'
  superpc.predictionplot: warning in layout(matrix(c(1, 4, 2, 5, 3, 6),
  3, 2, byrow = TRUE), width = c(0.8, 0.2), heights = c(0.34, 0.33,
  0.33)): partial argument match of 'width' to 'widths'
  superpc.predictionplot: warning in layout(matrix(c(1, 5, 2, 6, 3, 7, 4,
  8), 4, 2, byrow = TRUE), width = c(0.8, 0.2), heights = rep(0.25,
  4)): partial argument match of 'width' to 'widths'
  superpc.predictionplot: warning in superpc.predict.red(train.obj, data,
  data.test, threshold = threshold, n.components = n.components,
  shrinkage = shrinkage, prediction.type = "discrete", n.class =
  n.class): partial argument match of 'shrinkage' to 'shrinkages'
  superpc.predictionplot: warning in layout(matrix(c(1, 2), 1, 2, byrow =
  TRUE), width = c(0.6, 0.4), heights = c(1, 1)): partial argument
  match of 'width' to 'widths'
  superpc.rainbowplot : extrapolate.surv: warning in surv.to.class2(y,
  ic, cutoff = cut): partial argument match of 'cutoff' to 'cutoffs'
  superpc.rainbowplot: warning in layout(matrix(1:npanels,
  ncomp.predictors + 4, 2, byrow = TRUE), width = c(0.8, 0.2), heights
  = c(0.2, rep(0.1, (ncomp.predictors + 2)), 0.05)): partial argument
  match of 'width' to 'widths'
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking examples ... [28s/28s] OK
• checking PDF version of manual ... OK
  NOTE: There was 1 note.
  See
  ‘/home/hornik/tmp/R.check/r-devel/Work/PKGS/superpc.Rcheck/00check.log’
  for details.