• using R Under development (unstable) (2012-02-23 r58468)
• using platform: i686-pc-linux-gnu (32-bit)
• using session charset: UTF-8
• checking for file ‘spider/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘spider’ version ‘1.1-1’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking whether package ‘spider’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... OK
• checking Rd files ... NOTE
  prepare_Rd: chaoHaplo.Rd:31-33: Dropping empty section \note
  prepare_Rd: checkDNA.Rd:33-35: Dropping empty section \note
  prepare_Rd: checkDNA.Rd:25-27: Dropping empty section \references
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  prepare_Rd: dataStat.Rd:42-44: Dropping empty section \note
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  prepare_Rd: nearNeighbour.Rd:53-55: Dropping empty section \note
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  prepare_Rd: nucDiag.Rd:23-25: Dropping empty section \details
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  prepare_Rd: paa.Rd:29-31: Dropping empty section \note
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  prepare_Rd: plot.slidWin.Rd:37-39: Dropping empty section \note
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  prepare_Rd: seqStat.Rd:36-38: Dropping empty section \note
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  prepare_Rd: slideAnalyses.Rd:76-78: Dropping empty section \note
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  prepare_Rd: slidingWindow.Rd:38-40: Dropping empty section \note
  prepare_Rd: slidingWindow.Rd:31-33: Dropping empty section \references
  prepare_Rd: spider-package.Rd:58-59: Dropping empty section \examples
  prepare_Rd: sppDist.Rd:36-38: Dropping empty section \note
  prepare_Rd: sppDist.Rd:30-32: Dropping empty section \references
  prepare_Rd: sppDistMatrix.Rd:22-24: Dropping empty section \details
  prepare_Rd: sppDistMatrix.Rd:34-36: Dropping empty section \note
  prepare_Rd: sppDistMatrix.Rd:28-30: Dropping empty section \references
  prepare_Rd: sppDistMatrix.Rd:40-42: Dropping empty section \seealso
  prepare_Rd: sppVector.Rd:28-30: Dropping empty section \note
  prepare_Rd: sppVector.Rd:20-22: Dropping empty section \references
  prepare_Rd: tajima.K.Rd:22-24: Dropping empty section \details
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  prepare_Rd: tclust.Rd:30-32: Dropping empty section \note
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  prepare_Rd: titv.Rd:19-21: Dropping empty section \details
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  prepare_Rd: titv.Rd:37-39: Dropping empty section \seealso
  prepare_Rd: tree.comp.Rd:52-54: Dropping empty section \note
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking examples ... [21s/21s] OK
• checking PDF version of manual ... OK
  NOTE: There was 1 note.
  See
  ‘/home/hornik/tmp/R.check/r-devel/Work/PKGS/spider.Rcheck/00check.log’
  for details.