• using R Under development (unstable) (2012-02-04 r58267)
• using platform: i686-pc-linux-gnu (32-bit)
• using session charset: UTF-8
• checking for file ‘sp/DESCRIPTION’ ... OK
• this is package ‘sp’ version ‘0.9-94’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking whether package ‘sp’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking compiled code ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking examples ... [14s/14s] OK
• checking for unstated dependencies in tests ... OK
• checking tests ... [12s/12s] OK
  Running ‘base.R’ [1s/1s]
  Comparing ‘base.Rout’ to ‘base.Rout.save’ ... OK
  Running ‘fail1.R’ [2s/2s]
  Comparing ‘fail1.Rout’ to ‘fail1.Rout.save’ ... OK
  Running ‘grid.R’ [1s/1s]
  Comparing ‘grid.Rout’ to ‘grid.Rout.save’ ...28,35c28,43
  < part.a part.b dist soil ffreq
  < Min. :0.000 Min. :0.000 Min. :0.000 Min. :1.000 1 : 779
  < 1st Qu.:0.000 1st Qu.:0.000 1st Qu.:0.119 1st Qu.:1.000 2 :1335
  < Median :0.000 Median :1.000 Median :0.272 Median :1.000 3 : 989
  < Mean :0.399 Mean :0.601 Mean :0.297 Mean :1.578 NA's:5009
  < 3rd Qu.:1.000 3rd Qu.:1.000 3rd Qu.:0.440 3rd Qu.:2.000
  < Max. :1.000 Max. :1.000 Max. :0.993 Max. :3.000
  < NA's :5009 NA's :5009 NA's :5009 NA's :5009
  ---
  > part.a part.b dist soil
  > Min. : 0.0000 Min. : 0.0000 Min. : 0.0000 Min. : 1.000
  > 1st Qu.: 0.0000 1st Qu.: 0.0000 1st Qu.: 0.1193 1st Qu.: 1.000
  > Median : 0.0000 Median : 1.0000 Median : 0.2715 Median : 1.000
  > Mean : 0.3986 Mean : 0.6014 Mean : 0.2971 Mean : 1.578
  > 3rd Qu.: 1.0000 3rd Qu.: 1.0000 3rd Qu.: 0.4402 3rd Qu.: 2.000
  > Max. : 1.0000 Max. : 1.0000 Max. : 0.9926 Max. : 3.000
  > NA's :5009.0000 NA's :5009.0000 NA's :5009.0000 NA's :5009.000
  > ffreq
  > 1 : 779
  > 2 :1335
  > 3 : 989
  > NA's:5009
  >
  >
  >
  138c146
  < 1.00 2.75 4.50 4.75 6.50 9.00 1
  ---
  > 1.00 2.75 4.50 4.75 6.50 9.00 1.00
  Running ‘pass1.R’ [1s/1s]
  Comparing ‘pass1.Rout’ to ‘pass1.Rout.save’ ...65c65
  < NA's :2
  ---
  > NA's : 2.000
  226c226
  < NA's :2 NA's : 1
  ---
  > NA's : 2.000 NA's : 1
  260c260
  < NA's :2 NA's : 1
  ---
  > NA's : 2.000 NA's : 1
  Running ‘point.in.polygon.R’ [1s/1s]
  Comparing ‘point.in.polygon.Rout’ to ‘point.in.polygon.Rout.save’ ... OK
  Running ‘sel.R’ [1s/1s]
  Comparing ‘sel.Rout’ to ‘sel.Rout.save’ ... OK
  Running ‘sp1.R’ [1s/1s]
  Comparing ‘sp1.Rout’ to ‘sp1.Rout.save’ ...79c79
  < NA's :2
  ---
  > NA's : 2.000
  Running ‘spDists.R’ [3s/3s]
  Comparing ‘spDists.Rout’ to ‘spDists.Rout.save’ ... OK
  Running ‘spplot.R’ [1s/1s]
  Comparing ‘spplot.Rout’ to ‘spplot.Rout.save’ ... OK
  Running ‘zerodist.R’ [1s/1s]
  Comparing ‘zerodist.Rout’ to ‘zerodist.Rout.save’ ...52c52
  < NA's :2
  ---
  > NA's : 2.000
  95c95
  < NA's :2 NA's : 1
  ---
  > NA's : 2.000 NA's : 1
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in ‘inst/doc’ ... OK
• checking running R code from vignettes ... [6s/6s] OK
• checking re-building of vignette PDFs ... [7s/7s] OK
• checking PDF version of manual ... OK